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Detailed information on CNT30376200


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SUI4|PSAL_ARATH, E-value = 2e-72

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30507460Arabidopsis thalianaNicotiana attenuata10.6733.9982.52103forward
CNT30710011Arabidopsis thalianaGlycine max9.1220.3785.2388forward
CNT30292923Arabidopsis thalianaTriticum aestivum6.3226.7586.8961forward
CNT30564216Arabidopsis thalianaActinidia chinensis7.3631.8488.7371forward
CNT3084712Arabidopsis thalianaVigna radiata26.6390.8180.93257forward
CNT30235368Arabidopsis thalianaBrassica oleracea16.2754.988.54157forward
CNT30154501Arabidopsis thalianaPrunus persica19.3859.9480.75187forward
CNT3031830Arabidopsis thalianaTheobroma cacao10.2627.1282.8399forward

Expression of CNT30376200

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MLSDKLHILVVRAHSLYITSFLLYITCHCINQEPKYLFFFDPINSTKEVL*

>peptide 2 (55 aa)
SSELSPSISRLKLVRLLLPPSQSQTRCDRWLSFLERRDTVDGEAHAEDDYQPSRG*

>peptide 3 (40 aa)
MVNKEDTLSDLTARTVKEETLLVGETPKGAPEMPFGTARR*

Sequence

>CNT30376200
CTCCAGTGAACTTAGCCCATCCATCAGCCGTTTGAAGCTGGTCAGGCTGCTTCTTCCGCCCAGTCAAAGTCAAACTCGGTGCGATCGATGGCTCTCCTTC
CTTGAAAGAAGAGATACCGTAGATGGTGAGGCACATGCTGAGGATGACTACCAGCCCAGCCGCGGCTAAAGACCCGGCTGACCCGGCGTAAGCAGTGTTC
CTTAATGGGCCAGCTTTGACGAATGGGCCCACTTCCACACCGCGGAGGAGAGGGTTGACGGCGGTACGGTATCCAGGGAGGTTGGAAAGGTACCACGCGA
TCAATGGGCTTGATGTCACCGGAGTTTCCAAACTTCCGATGAATGGATCACCGTTGATTGGTTGAACTACTTGGAATGTTGTCTGACAAATTACATATAT
TAGTGGTTAGAGCACACTCACTATACATAACTTCTTTTCTTCTATACATAACTTGCCATTGCATAAATCAAGAACCTAAATATTTATTCTTTTTCGATCC
TATAAATTCCACAAAAGAGGTTCTATAGAAATCGTTAAAAATATTTATGGATATTTTATGTAATACCAAAACATAAAGTATCAAACTAAAGAATATGGCC
AATCTACACAACTAGTTGTACTTATTATGGCCGTTTTATCCTAACCAAATTGATTTATCAAATAACATGTTATTTCCTAAGATATTAAACCGCATGACTG
ATAATTTGTATATTCATTTTGTGTCCGATGGTTAACAAAGAAGATACCTTGTCGGATTTAACAGCTCGGACAGTGAAGGAAGAGACTCTTTTGGTCGGAG
AAACACCGAAAGGAGCACCGGAGATGCCCTTCGGGACGGCGAGACGCTGAGAAAGAGAAGCGGAGGAGAAGCTGCTCCTTAGCTGGCTCGCCATTGGAGA
TGCACTCGCTGCCATTGTTCTTTTTGTCTTGGTTGTTCTCTTATGAAAATTAAAATAAAATCGAG