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Detailed information on CNT30376051


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41975|TIP22_ARATH, E-value = 2e-107

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Arabidopsis thalianaSetaria viridis16.9521.8780.43138forward
CNT30521388Arabidopsis thalianaSetaria italica16.9521.8480.43138forward
CNT30727261Arabidopsis thalianaCorchorus capsularis16.4624.0681.34134forward
CNT30628730Arabidopsis thalianaVigna unguiculata17.9432.7480.82146forward
CNT30552658Arabidopsis thalianaOryza glaberrima16.8320.3681.02137forward
CNT30147201Arabidopsis thalianaMedicago truncatula11.9220.2985.5797forward
CNT3061912Arabidopsis thalianaArabidopsis lyrata39.1910094.98319forward
CNT30627409Arabidopsis thalianaDaucus carota18.4323.8982.67150forward
CNT30365926Arabidopsis thalianaSorghum bicolor20.6425.1180.36168forward
CNT30595700Arabidopsis thalianaOryza meridionalis5.4120.5690.9144forward
CNT30644098Arabidopsis thalianaCannabis sativa17.9452.1484.25146forward

Expression of CNT30376051

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MLPPTARPSVTAGLRCPPEMLAAMETPTKRAKA*

>peptide 2 (38 aa)
MEPPLKGPAARMLAPTMKPIAIGAMVPSEPFFGSAAVA*

Sequence

>CNT30376051
CAAAAAGCAAGCCAAGCAAATTAAAACGCTATAGGATTGATCAAGGGTAGCTTTCTGTGGTGGGAGCTGGAGCGTAGGATCCGATGAAGACGTCTCCGTA
GATGAGTCCAGCAAGTGCACCACCGACTAGTGGACCCACCCAGTAGATCCATATCTGAGAGAAGTCACCACTGACAACAGCTGGTCCAAATGACCTGGCC
GGGTTCATGGAACCACCGCTAAAGGGACCCGCTGCGAGGATGTTGGCACCAACGATGAAACCGATAGCAATTGGAGCAATGGTCCCGAGTGAACCTTTCT
TTGGATCAGCCGCTGTGGCGTAGACTGTGTAGACCAGAGCAAAGGTCACCACAATCTCCATCACTACTCCTTCAATAGCTCCTAAACCGGCCGCTACTCC
ATGAGTCGACGAGGAGGAGACACGCGACGATGGAGCCAAGGCATTGAGCAATCCAGTAAAAGAAACCGGTTATTACTGTGATGTTGCCACCGACGGCGAG
ACCGAGTGTCACGGCGGGGTTAAGGTGTCCGCCGGAGATGTTGGCGGCTATGGAAACACCAACGAAAAGGGCAAAGGCGTGAGCCACAGCGACAGCGACA
AGACCAGCGGGGTCCAAGGCTGCATCGGATGTGAGCTTGGCAAAAGCAAGAGCAGAGCCAACGCCAGCAAACACAAAGAGAAGAGTTGCGATAAATTCAG
ACAAGTAAGCCTTAAGAGATGCTACACTAAAGGAGTCACCCACACTTCCTATCTCAATCTTCACCATTTTGATCCGACAAAATAACTCTGTTTTTCGACT
TTGGTTGATTACAA