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Detailed information on CNT30375849


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRV5|METE2_ARATH, E-value = 9e-146

BLAST vs NONCODE:
NONVVIT002763, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673222Arabidopsis thalianaSetaria viridis26.8847.784.05301forward
CNT30534084Arabidopsis thalianaEucalyptus grandis16.8892.6586.77189forward
CNT30513228Arabidopsis thalianaJuglans regia25.837.1584.08289forward
CNT30403349Arabidopsis thalianaBeta vulgaris17.5956.6188.83197forward
CNT30504596Arabidopsis thalianaNicotiana attenuata16.6130.2483.33186forward
CNT3096726Arabidopsis thalianaSolanum tuberosum20.6297.4787.01231forward
CNT30137932Arabidopsis thalianaLolium perenne22.0598.0283247forward
CNT309700Arabidopsis thalianaZea mays8.2128.486.9692forward
CNT30650401Arabidopsis thalianaRosa chinensis27.9535.5384.98313forward
CNT30211728Arabidopsis thalianaHelianthus annuus12.0551.1485.19135forward
CNT30624889Arabidopsis thalianaDaucus carota16.2547.8986.81182forward
CNT30689645Arabidopsis thalianaTriticum urartu7.9520.9488.7689forward
CNT30721247Arabidopsis thalianaTriticum spelta25.5454.4880.07286forward
CNT30367469Arabidopsis thalianaSorghum bicolor24.2939.0284.56272forward
CNT3027382Arabidopsis thalianaPopulus trichocarpa28.1265.0882.54315forward
CNT30148668Arabidopsis thalianaBrachypodium distachyon18.3967.5482.04206forward
CNT30118099Arabidopsis thalianaOryza nivara19.226.3883.72215forward
CNT30604869Arabidopsis thalianaOryza punctata22.0594.6483247forward

Expression of CNT30375849

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MALSAGLTSVYFLVFRPQSGLTHKMFCSRTASILLILSAISSVDGILGE*

>peptide 2 (38 aa)
MVFSESECRKHQDRFLHRTSLLHGTLREASRLNESSQW*

>peptide 3 (31 aa)
FCFFDQRSIYFIRENKDTYNIATRETYSIKP*

Sequence

>CNT30375849
TTTTTGTTTTTTTGATCAAAGAAGCATATATTTCATTAGAGAAAACAAAGATACATATAACATTGCAACAAGAGAAACATATAGTATAAAGCCGTAAACT
CTCTTCAACGAAAGCGAGAGAGTGTGACTCCATTCCCTCAAAACCTAACTTTGGCTAAAATATTTTTCTTGGAAGAAAAGTTATTGAAACTGAACAAACA
CAAACCACGTAGAAAAATCCCGGAATATAGAAATAATATCTTCAAGCTCTTCACTTGGCACTACCGAGCTGGGAGCGGATAAGCTTAGCCGCGTCAACCA
TGGCTTTAAGTGCTGGTTTAACCTCAGTGTACTTCCTTGTCTTCAGACCACAGTCAGGGTTAACCCACAAGATGTTCTGCTCAAGAACCGCAAGCATCTT
GTTGATCCTGTCTGCAATTTCATCTGTGGATGGTATTCTCGGAGAGTGAATGTCGTAAACACCAGGACCGATTCCTGCACCGTACTTCACTCCTTCACGG
AACACTGAGAGAAGCTTCTCGTCTGAACGAGAGTTCTCAATGGTGATGACATCAGCGTCCATGTCAATGATTGAGTGGATGATGTCGTTGAAGTTTGAGT
AACACATGTGAGTGTGAATCTAGAAGATAAAATAAAGAAGTTAGTTGCAGAAACATTCATCACTATTTGAGATTTTAAGTGTACAGTGTTGTTACCTGAG
TGCTGTCTTGGACGCCACAGTTGTCCAAGTAGAAAGAGTGTTCGGCTTTCCTAAGAGGCAATCCTTCTCTAAGTGCGGCTTCATCGATCTGAATGACTCC
AATACCGCCTTTCTCGAGGTCTTCCACTTCATCTTTGATGGCCAAAGCGATCTGGTAACAGGTTTCGTGCCTGGGCTGGTCGTTTCTGACAAAAGACCAG
TTGAGAATTGTGACTGGACCTGTAAGCATACCCTTCATTGGACGTTTGGTCATGCTCTGAGCTGTTGAGGACCAGAAGACTGTCATTGGCTTGGGGCGGC
TCACGTCACCATAGATAACTGGTGGCTTCACACAGCGAGATCCATAGGATTGCACCCATCCGTTTGCTGTGAATGCGAAACCTGACAATTGCTCTCCAAA
GTACTCAACCATGTCGTTTC