Detailed information on CNT30375710


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONBNAT007269, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730459Arabidopsis thalianaCorchorus capsularis47.5298.5694.61167reverse complement
CNT30115258Arabidopsis thalianaEutrema salsugineum43.08100.0997.451058forward

Expression of CNT30375710

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MAHLELSIPCDGSTKQPTRPTYLKFENRSRALRPQCL*

>peptide 2 (32 aa)
FRGGSNLSDKGLNLSGSWQQGHSATYNTPSRI*

>peptide 3 (82 aa)
MVRLVFRPYTQVRRTICTSVSLRASTRVSSGFTPLRHSSPSFGSRQACSHSNPSQKIKVGRRCTREGSRQSASLRLTGLLTR*

>peptide 4 (64 aa)
MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIEAWLLPRRPGIG*

>peptide 5 (53 aa)
MSTTGRERHSVLRIFKGRRGRTGHHATCGALPAAGPYLRLSRFQGGQAVKQKR*

>peptide 6 (39 aa)
MCRPSQTPHLTMSSARIDPPKRALGPKTGAVHLGDLMRL*

>peptide 7 (96 aa)
MLTLEPFSEDQGRSAVHPRGIPPISFLAPYGFTHPLTRTHVRLLGPCFKTGRMGSPQADARSTLMPRHAVRRVLQTTITAATSPQAYQKPGLRPPP*

Sequence

>CNT30375710
ATTTAGGGGAGGGTCGAATCTTAGCGACAAAGGGCTGAATCTCAGTGGATCGTGGCAGCAAGGCCACTCTGCCACTTACAATACCCCGTCGCGTATTTAA
GTCGTCTGCAAAGGATTCTACCCGCCGCTCGGTGGTAATTATAATTCAAGGCGGTCCGAACGACGCTTCCGCCGAACGGACTTAGCCAACGACACGTGCC
TTTGGGAGCCTAAGCTCCTACTGAGGGTCGGCAATCGGGCGGCGGGCGCATGCGTCGCTTCTAGCCCGGATTCTGACTTAGAGGCGTTCAGTCATAATCC
AGCGCACGGTAGCTTCGCGCCACTGGCTTTTCAACCAAGCGCGATGACCAATTGTGCGAATCAACGGTTCCTCTCGTACTAGGTTGAATTACTATCGCGA
CGCGGGCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTCGTACTGAAAATCAGAATCA
AACGAGCTTTTACCCTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAACAGATGTGCCGCCCCAGCCA
AACTCCCCACCTGACAATGTCCTCCGCCCGGATCGACCCGCCGAAGCGAGCCTTGGGACCAAAAACAGGGGCTGTTCACCTTGGAGACCTGATGCGGTTA
TGAGTACGACCGGGCGTGAGCGGCACTCGGTCCTCCGGATTTTCAAGGGCCGCCGGGGGCGCACCGGACACCACGCGACGTGCGGTGCTCTTCCAGCCGC
TGGACCCTACCTCCGGCTGAGCCGTTTCCAGGGTGGGCAGGCTGTTAAACAGAAAAGATAACTCTTCCCGAGGCCCCCGCCGACGTCTCCGGACTCCCTA
ACGTTGCCGTCAACCGCCACGTCCCGGTTCCGGAATTTTAACCGGATCCCCTTTCGAAGTTCGCGCTTAAGCGCTATCAGACGGGTTTCCCCCGACTCTT
AGGATCGACTAACCCATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATC
TGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCTAGGTTTTGCAGCGACCGCCGCGCCCTCCTACTCATCGAGGCCTGGCTCTTGCCCCGACGGCCGGG
TATAGGTTAGCGCGCAGTTGGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTC
CGTGTGACGGCTCAACAAAGCAGCCGACACGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCAATGCCTCTAATCATTGGCTTT
ACCCGATAGAACTCGCGTCCGAGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGATTAGTCTTTCGCCCCTATACCCAA
GTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCTTCCACCAGAGTTTCCTCTGGCTTTACCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCC
GACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGCGGTGCACCCGCGAGGGATCCCGCCAATCAGCTTCCTTGCGCCTTACGGG
TTTACTCACCCGTTGACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGACGCCCGGAGCACGCTGA
TGCCGAGGCACGCCGTTAGGCGCGTGCTGCAGACCACGATCACGGCAGCGACGTCTCCACAAGCGTATCAAAAGCCCGGGCTTAGGCCGCCACCGTAATC
CGCGTCGGTCCACGCCCCGAATCGATCGGCGGACCGGATTGCTCCGTTCCGCATCCGACCAGGACGCATCGCCGGCCCCCATCCGCTTCCCTCCCGACAA
TTTCAAGCACTCTTTGACTCTCTTTTCAAAGTCCTTTTCATCTTTACCTCGCGGTACTTGTTCGCTATCGGTCTCTCGCCCGTATTTAGCCTTGGACGGA
ATTTACCGCCCGATTGGGGCTGCATTCCCAAACAACCCGACTCGTAGACAGCGCCTCGTGGTGCGACAGGGTCCGGGCACGACGGGGCTCTCACCCTCTC
TGGCGCCCCTTTCCAGGGAACTTAGGCCCGGTCCGTCGCTGAGGACGCTTCTCCAGACTACAATTCGAACGCCGAAGACGTCCGATTTTCAAGCTGGGCT
CTTCCCGGTTCGCTCGCCGTTACTAAGGGAATCCTTGTTAGTTTCTTTTCCTCCGCTTATTGATATGCTTAAACTCAGCGGGTAATCCCGCCTGACCTGG
GGTCGCTATATGGACTTTGGGTCATCTACAGCTTTCGGACAAGAGCGACCGATAAA