Detailed information on CNT3037560


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 1e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673662Cucumis meloSetaria viridis6.3923.8486.5767forward
CNT30515355Cucumis meloJuglans regia18.2131.0685.86191forward
CNT30701260Cucumis meloQuercus lobata7.7220.488.8981forward
CNT30344605Cucumis meloEragrostis tef4.4821.3693.6247forward
CNT30155213Cucumis meloPrunus persica7.7229.1490.1281forward

Expression of CNT3037560

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGQKHLQGTSSSQGLSPCCAGALQKQWQGTQ*

>peptide 2 (33 aa)
MLRWCSTKAMARNSMTKMVGKVPHGTASMAHLQ*

>peptide 3 (32 aa)
MESETNQSIQKEYQDPFGHFLKPLDKAIIMLR*

>peptide 4 (69 aa)
MTTDLKHLIYSKSSLSQKLQLINKEKLIIIKHDKNQGQFDMIFFFSFLVYGIYVCCLSRFSLLKKGLSS*

>peptide 5 (53 aa)
MENREDALTATPEMGTAAANLDLEEERTEGKAVVAMPQLIKVLEAIEEKERRD*

Sequence

>CNT3037560
ACCGTTTTTGATCTCTTTCACTTTGTATTCCTTCAACTTTTCAGGATCTTTTGAGTAGCCTAATGGGTCAAAAGCACCTCCAGGGTACTTCTTCTTCTCA
GGGTCTTTCTCCATGCTGCGCTGGTGCTCTACAAAAGCAATGGCAAGGAACTCAATGACCAAAATGGTGGGCAAAGTTCCCCATGGAACTGCAAGCATGG
CCCATCTGCAGTGAATTAGCTCAGACTCCTTGAATCTCTCGAGGTTCTCTGGCACTTCTCCCAGCCGAAGAGGGTCGAATCCAAAATCACTGTTGAACAT
GACCACAGATCTCAAACATCTAATCTATTCTAAGTCATCACTTAGCCAAAAACTACAGCTAATAAATAAGGAAAAATTAATCATCATTAAGCATGACAAA
AACCAAGGCCAGTTTGATATGATTTTTTTTTTTTCATTCTTAGTTTATGGAATTTATGTTTGTTGTCTCTCAAGGTTTTCCCTTTTGAAGAAAGGCTTGA
GTTCTTAGTTATGTTCAAAAGAACAGAAAAAACTACTTCCTTTGGTTATGGAAACTTAGCTTGATTTTTAAAAATATTGGTAAAAGAAAATATAGGCTGA
GTAATGTTTATAAACTTCAAAACAACTTTAATATAAGTTTAAATTCACACACATAACGATTTCATGGAGTCAGAGACAAATCAAAGCATCCAGAAAGAGT
ATCAGGATCCTTTTGGACATTTCCTCAAACCCCTAGATAAAGCAATCATCATGCTACGTTAACAAACCCCACCAGATTAAACAAACAAAAGTCATTTCAA
AATTGAATAATACCCAGGAGCTGAGCCATCGAGGTAGGGGGGACGGGGCTGGCCAGGCATCCACTCAGAGGACATGGAAAATCGGGAAGATGCATTGACA
GCGACACCGGAAATGGGGACAGCGGCTGCGAATTTAGACTTAGAAGAAGAAAGGACTGAAGGGAAAGCGGTGGTGGCAATGCCACAGCTCATCAAGGTGT
TGGAAGCCATTGAAGAAAAAGAGAGAAGAGATTGAGAGAGAGAGTGAGA