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Detailed information on CNT30375299


BLAST search results

BLAST vs Swiss-Prot:
sp|P12360|CB11_SOLLC, E-value = 2e-12

BLAST vs NONCODE:
NONATHT002466, E-value = 1e-139

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30525458Arabidopsis thalianaPhaseolus vulgaris27.115.8484.91106forward
CNT30708469Arabidopsis thalianaGlycine max27.117.8884.91106forward
CNT30236705Arabidopsis thalianaBrassica oleracea47.8339.792.51187forward
CNT3076072Arabidopsis thalianaBrassica juncea63.1736.2287.85247forward
CNT30263158Arabidopsis thalianaBrassica rapa22.5134.7895.4588forward
CNT30219526Arabidopsis thalianaKalanchoe fedtschenkoi21.2319.8684.3483forward
CNT3034379Arabidopsis thalianaTheobroma cacao27.1113.5983.96106forward

Expression of CNT30375299

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MLSRTVKVSWSWLARHPVSSHSDTTNIPGVWEWNSGGYEFRLGRREKRRVHGGYATAHKRVRRHRFSLSVVVFATKGERCGREVFGGSVNVGD

>peptide 2 (35 aa)
MPQLISEFDAIVSLYLSLCLPPKEKDVDERCLVEV*

>peptide 3 (58 aa)
TASIAHLQWMSSDSLYLSRFAGTSPSPSGSNPKSLHNVEQNRQGKLVVARQASSEQPF*

Sequence

>CNT30375299
AACAGCGAGCATAGCCCATCTACAGTGGATGAGCTCTGACTCTTTGTATCTCTCAAGGTTCGCTGGAACTTCTCCAAGTCCAAGTGGGTCAAACCCAAAG
TCACTGCACAATGTTGAGCAGAACCGTCAAGGTAAGCTGGTCGTGGCTCGCCAGGCATCCAGTGAGCAGCCATTCTGATACGACCAACATTCCCGGCGTT
TGGGAGTGGAACTCCGGCGGATACGAATTTAGACTTGGAAGAAGAGAGAAGCGAAGGGTACACGGCGGCTATGCCACAGCTCATAAGCGAGTTCGACGCC
ATCGTTTCTCTCTATCTGTCGTTGTGTTTGCCACCAAAGGAGAAAGATGTGGACGAGAGGTGTTTGGTGGAAGTGTGAATGTGGGAGACTG