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Detailed information on CNT30375125


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01667|CAB6_ARATH, E-value = 1e-26

BLAST vs NONCODE:
NONATHT002466, E-value = 2e-125

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546130Arabidopsis thalianaIpomoea triloba14.2531.8689.2365forward
CNT30311330Arabidopsis thalianaCamelina sativa31.854.9291.72145forward
CNT30612587Arabidopsis thalianaArabis alpina33.9942.9488.39155forward
CNT30478064Arabidopsis thalianaArabidopsis halleri35.7551.5896.93163forward

Expression of CNT30375125

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MPQLISEFDAIVSLYLSLCLPPKEKDVDE

>peptide 2 (34 aa)
VQKVHHLEFKLTRAFDHQDKLQEFTNLSFITQCF*

>peptide 3 (51 aa)
GSKGSSLRIQAHTSIRSPRQITGIHKSVFHYTVFLIHIKLIRYTYFYFYIH*

>peptide 4 (86 aa)
MDPPSELPSSPMVSWSWLARHPVSSHSDTTNIPGVWEWNSGGYEFRLGRREKRRVHGGYATAHKRVRRHRFSLSVVVFATKGERCGR

Sequence

>CNT30375125
GGGTTCAAAAGGTTCATCACTTAGAATTCAAGCTCACACGAGCATTCGATCACCAAGACAAATTACAGGAATTCACAAATCTGTCTTTCATTACACAGTG
TTTTTGATACACATAAAGCTCATAAGGTACACATATTTCTATTTTTACATTCATTAGTTGAAAGGGATAACAATATCGCCAATGTTGTTGTGCCATGGAT
CCGCCAAGTGAGTTGCCAAGTTCTCCAATGGTAAGCTGGTCGTGGCTCGCCAGGCATCCAGTGAGCAGCCATTCTGATACGACCAACATTCCCGGCGTTT
GGGAGTGGAACTCCGGCGGATACGAATTTAGACTTGGAAGAAGAGAGAAGCGAAGGGTACACGGCGGCTATGCCACAGCTCATAAGCGAGTTCGACGCCA
TCGTTTCTCTCTATCTGTCGTTGTGTTTGCCACCAAAGGAGAAAGATGTGGACGAG