« Back to Arabidopsis thaliana search


Detailed information on CNT30375121


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LZI2|UXS2_ARATH, E-value = 7e-134

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703138Arabidopsis thalianaQuercus lobata16.4222.983.33120forward
CNT30277485Arabidopsis thalianaChenopodium quinoa27.9123.9282.84204forward
CNT30503775Arabidopsis thalianaNicotiana attenuata20.1133.1882.99147forward
CNT30289293Arabidopsis thalianaTriticum aestivum9.7123.3685.9271forward
CNT30539234Arabidopsis thalianaBrassica napus77.0261.5380.46563forward
CNT30508626Arabidopsis thalianaSolanum lycopersicum10.422.4984.2176forward
CNT30143836Arabidopsis thalianaMedicago truncatula26.5433.2885.05194forward
CNT30261302Arabidopsis thalianaBrassica rapa37.0752.4283.03271forward
CNT30131528Arabidopsis thalianaLolium perenne1320.6183.1695forward
CNT30713695Arabidopsis thalianaMalus domestica golden17.5128.3881.25128forward
CNT30477892Arabidopsis thalianaArabidopsis halleri38.0325.9885.25278forward
CNT30359656Arabidopsis thalianaLactuca sativa22.449.781.71164forward
CNT30425316Arabidopsis thalianaPapaver somniferum17.125.9380.8125forward
CNT3055709Arabidopsis thalianaAmborella trichopoda17.9220.0382.44131forward
CNT30337932Arabidopsis thalianaCynara cardunculus22.442079.88164forward

Expression of CNT30375121

Peptides detected in this lncRNA

>peptide 1 (70 aa)
QMVDLINLKKNRLNHIVTDHLKVRVTEMVHNVLFPSSEEIINNNHSISSSHQTIHEMRSNESSTTGHNHS*

Sequence

>CNT30375121
CAAATGGTAGATCTGATCAACCTCAAGAAGAATCGGCTCAACCACATCGTGACGGATCATCTCAAAGTTAGGGTTACTGAAATGGTGCATAACGTTCTCT
TTCCTTCCAGTGAAGAAATTATCAACAACAATCACAGTATCTCCTCTAGCCATCAAACGATCCACGAGATGCGATCCAACGAATCCAGCACCACCGGTCA
CAACCACTCTTAGCCCTTTGCGTTTCAATCCCAGTGGGATTTTCCCGCCTGTTGCTCCGATCCGGTTCAGGTACTCGAGGCTAGGTTTCCTCTGAGCTTG
TATAGCCGGAACGTACGATTCGTCGGGTCGGATTCCGTAACCGGAGAAAGGATCCGAGTAAGGGGTTGATTGTGTGGAGCGAGGGAAAATTGTGAAAACC
AAAGTAGCGATTGCAATGCCAACGAGAACGAAGATAAGTCTCTGTTCACGGAGCATGTAACGCATCGGACGAGTCACCGTGAACCATGGTTTGATTGGTT
TCGGGTAATAAGCATCGGCGGTTGGTTGATCCGTCTCGTGTCGCCGATTGATCAGCTCGCTCGCCATCTCCAAACCTCACAAATTGAATTCTAGATCTAG
AATCGAAAGATAGAAAACCAAAATCGATCAATCGTTAAGAAGAAATTTTATTTTTCTAGGAAAAAATCAATCACCGAGTCGAACTCGCCGGGAACTGAGT
CGGACCTTGAACGAGAGAGTGAAAAGCGAAT