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Detailed information on CNT30375086


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LK36|SAHH2_ARATH, E-value = 2e-119

BLAST vs NONCODE:
NONBNAT006042, E-value = 4e-125

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639580Arabidopsis thalianaNymphaea colorata12.8320.2683.792forward
CNT30529934Arabidopsis thalianaEucalyptus grandis19.834.0581.69142forward
CNT30517189Arabidopsis thalianaJuglans regia19.1135.2283.94137forward
CNT30702258Arabidopsis thalianaQuercus lobata40.4561.784.14290forward
CNT3020603Arabidopsis thalianaCitrullus lanatus51.1923.7185.56367forward
CNT3072357Arabidopsis thalianaQuercus suber68.948.184.41494forward
CNT30380073Arabidopsis thalianaManihot esculenta34.3123.8483.74246forward
CNT30628366Arabidopsis thalianaVigna unguiculata25.812.9585.95185forward
CNT30200315Arabidopsis thalianaPisum sativum49.6568.9984.27356forward
CNT30505192Arabidopsis thalianaNicotiana attenuata22.5928.6783.33162forward
CNT3076639Arabidopsis thalianaBrassica juncea55.2361.9786.36396forward
CNT30607325Arabidopsis thalianaGossypium raimondii70.7139.383.83507forward
CNT30651401Arabidopsis thalianaRosa chinensis22.1859.3385.53159forward
CNT30365203Arabidopsis thalianaSorghum bicolor23.0176.7482.42165forward
CNT30355186Arabidopsis thalianaLactuca sativa38.4937.584.06276forward
CNT30645006Arabidopsis thalianaCannabis sativa22.4519.5683.23161forward
CNT3026673Arabidopsis thalianaPopulus trichocarpa36.427.6285.82261forward
CNT30151326Arabidopsis thalianaBrachypodium distachyon17.7131.2882.68127forward
CNT30723196Arabidopsis thalianaLupinus angustifolius70.9963.8684.09509forward

Expression of CNT30375086

Peptides detected in this lncRNA

>peptide 1 (67 aa)
PLFIPIFGHTHQKTNISYFSDQTRPNPTQTIANKRLNQKTKRRTKAWLFYPLSTCSEQACKDLQRVC*

>peptide 2 (50 aa)
MTNVTDNGIVLHLPHVINHNNIFVTSSGTEDISSPHETIGKRVSASVQVVK

>peptide 3 (85 aa)
PYSYQYLVTRIRRPISHISPTKPDPIRLKQLPINGLIRKPNEEPKLGSFILSVPVVNRLVRTFNGYADIVRLVLGKLGESCTKLA*

>peptide 4 (33 aa)
PLIHTNIWSHASEDQYLIFLRPNQTQSDSNNCQ*

Sequence

>CNT30375086
CCCCTTATTCATACCAATATTTGGTCACACGCATCAGAAGACCAATATCTCATATTTCTCCGACCAAACCAGACCCAATCCGACTCAAACAATTGCCAAT
AAACGGCTTAATCAGAAAACCAAACGAAGAACCAAAGCTTGGCTCTTTTATCCTCTCAGTACCTGTAGTGAACAGGCTTGTAAGGACCTTCAACGGGTAT
GCTGACATAGTCAGATTGGTCCTTGGTAAGCTTGGTGAGTCTTGCACCAAGCTTGCCTAAGTGAAGTGCAGCTACCTTCTCATCCAAGTGTTTAGGCAAA
ACATAGACCTTCTTCTCATACTTCCCGCTTGACTTCTCGTTCCAGAGCTCAAGCTGTGCAATCACCTGGTTGGTGAATGAGCACGACATCACGAAACTCG
GGTGTCCAGTGGCGCATCCCAAGTTCATCAAACGACCTTCAGCTAGAACAATGATGCCAGAGTTGGTATCAGGAAACACCCACCTATCGGTCTGTGGCTT
GATGGTAATACGTTTCACACCAGGGTAGGTCTCAAGTCCAAGCATGTCGATTTCATTGTCAAAATGACCAATGTTACAGACAATGGCATTGTTCTTCATC
TTCCTCATGTGATCAACCATAATAATATCTTTGTTACCAGTAGTGGTACAGAAGATATCAGTAGCCCTCATGAGACCATCGGGAAGCGAGTGTCGGCATC
CGTACAAGTTGTCAAAC