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Detailed information on CNT30374836


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554109Arabidopsis thalianaOryza glaberrima15.7326.5681.06132forward
CNT3022241Arabidopsis thalianaPopulus trichocarpa20.517.6881.98172forward
CNT30102065Arabidopsis thalianaOryza rufipogon15.7322.2281.82132forward
CNT30576737Arabidopsis thalianaOryza barthii15.7330.3481.06132forward
CNT30333449Arabidopsis thalianaCynara cardunculus15.1421.1781.1127forward

Expression of CNT30374836

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MCRLSKNIQIMCQLYIKTWRILLVVGLCKLCYKFVT*

>peptide 2 (38 aa)
MATSPGVSRAASDVSFAIYTNVTHSLSNGRANTSENKE*

>peptide 3 (74 aa)
MRTYQSTGDVFKEETSGGGAEKLSDPVENSGDDCDLTTDSKTKSDGWVHMATGDVGSDCNGHEESKTMTNRDGH*

Sequence

>CNT30374836
GCAACGCTGTGGGTTGGAACCGCCTGCGTTTTCAATAGTTTTAGCGCTCGTTCATTAGTTTTTATTAATTAAAATGCCTCCAGAATTTGCCTACTAGTGC
GAAATGAAACCTACAGTATAAAATGCTAGCTTGAAATAGAAAAAACCCTACAATATTCTATAACTTCACTTTTAAACAAAATCATGTGTCGTTTGTCCAA
AAACATACAAATCATGTGTCAACTATATATTAAAACATGGAGAATATTATTGGTTGTTGGACTTTGTAAACTATGTTATAAATTTGTAACCTAGTTTTCA
ATCAAGTTAAGATTGTCCTTAAATACCTTTATTCTGTATTATTTTATTTTTGTTGTTTTGTAGACCTATACTATGATTCTCTTTATTTTACGAGAAAGTA
AGTAAAGGTGATGAGAACATACCAATCCACCGGTGACGTATTTAAGGAGGAAACAAGCGGCGGTGGAGCCGAGAAGCTGAGCGATCCAGTAGAAAACTCC
GGTGATGACTGTGATTTGACCACCGACAGCAAGACCAAAAGTGACGGCTGGGTTCACATGGCCACCGGAGATGTTGGCTCCGATTGCAACGGCCACGAAG
AGAGCAAAACCATGACAAACCGCGATGGCCACTAGTCCCGGTGTATCAAGAGCAGCGTCCGACGTCAGCTTTGCTATATACACAAATGTGACACATTCAT
TAAGCAATGGCAGAGCCAACACCAGCGAAAACAAAGAGTAAAGTGGAGATGAACTCAGCGAGGTAAGCTCTTAGAGAAGCCAAGCTGAATGAATCATCAA
AGGAACCAAAGGCAACTCCAGCCATTGTTGTAGATGAAG