« Back to Arabidopsis thaliana search


Detailed information on CNT30374725


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9XF88|CB4B_ARATH, E-value = 3e-82

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30500595Arabidopsis thalianaCoffea canephora21.112.0982.6192forward
CNT30708158Arabidopsis thalianaGlycine max32.1116.8982.14140forward
CNT30562752Arabidopsis thalianaActinidia chinensis32.811.383.22143forward
CNT30236263Arabidopsis thalianaBrassica oleracea47.0242.1888.29205forward
CNT30262014Arabidopsis thalianaBrassica rapa43.1240.9690.43188forward
CNT3036109Arabidopsis thalianaCucumis melo33.4914.0582.88146forward

Expression of CNT30374725

Peptides detected in this lncRNA

>peptide 1 (34 aa)
VLPSNTGEPFDGDSAKSGEHCPPTVNQLTFSESL*

>peptide 2 (46 aa)
MAETASIWDTPPVCLNQKDRTRSPRQVNRRDIRVILRLGTIEAGLR*

Sequence

>CNT30374725
GCGTCTTGCCAAGTAACACCGGTGAGCCATTCGACGGTGATAGCGCCAAGAGTGGCGAGCATTGCCCACCGACCGTGAATCAGCTCACATTCTCTGAATC
TTTGTAGCCCGAAGACTTCACTATATGGCTGAAACGGCGTCGATTTGGGATACTCCGCCGGTTTGCCTAAACCAAAAGGATCGAACCCGTAGTCCCCGAC
AAGTGAACCGTCGAGATATTCGGGTGATTTTGCGCCTGGGAACCATAGAGGCCGGTCTGAGATAACCGTCTTAGCCTTTTTGGGAGATGCTTTCTTGGTT
CCGAATCCGAACCGGGCTGTGAACCGGCTTGAATTGGAGCTAATGTCGGAAACCACCCGGGTACCCATGATTGAAGAAGCAGCAGCGGCGGTTGAAGTGG
CGGCCATCTCCGGCGTCGTTAGTTAGTTCTGTCGCG