Detailed information on CNT30374608


BLAST search results

BLAST vs Swiss-Prot:
sp|P84977|GRP3_POPEU, E-value = 5e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3047102Arabidopsis thalianaPrunus dulcis22.0212.9384.3483forward
CNT3060770Arabidopsis thalianaArabidopsis lyrata33.9538.4493.75128forward
CNT30408881Arabidopsis thalianaPapaver somniferum20.167.4485.5376forward

Expression of CNT30374608

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MRSSISLGVRSRRVTDLGINNVAVLSEGSLKSSVISGPC*

>peptide 2 (67 aa)
MLRPSRSCPFIPSIASFMAFSSLKNENSNRVIESSNRETQDRNRSVEDEIIDITRSPISACNRPWNQ*

Sequence

>CNT30374608
TTCCTCGTGACTGAGCCTCGTTAACAGTGATGCTACGGCCATCGAGATCTTGTCCGTTCATTCCCTCAATCGCATCCTTCATGGCTTTCTCATCCTTGAA
GAACGAGAATAGTAACAGAGTAATCGAATCAAGTAACAGAGAAACACAAGATCGGAACAGATCCGTCGAGGATGAGATCATCGATATCACTCGGAGTCCG
ATCTCGGCGTGTAACAGACCTTGGAATCAATAACGTCGCCGTATTGAGCGAAGGCAGTCTCAAGAGCTCTGTCATCAGTGGCCCATGCTAGACCTCCAAC
GAAGCACCGATACTCAACATCACCGGACGCCATTGAAATTTGAAAAGAAGATCTAAGGGATTACAGTGAGAGTAGTG