Detailed information on CNT30374560


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 7e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30727224Arabidopsis thalianaCorchorus capsularis43.5337.8581.9232forward
CNT30382149Arabidopsis thalianaManihot esculenta16.8931.5887.7890forward
CNT30562195Arabidopsis thalianaActinidia chinensis44.2829.0379.24236forward
CNT30420453Arabidopsis thalianaPapaver somniferum20.6412.3285.45110forward
CNT30579352Arabidopsis thalianaEchinochloa crusgalli21.216.2482.3113forward

Expression of CNT30374560

Peptides detected in this lncRNA

>peptide 1 (63 aa)
KREINSVVCGWELLVCGVDEENFVDESSDSTADERSGPVDPVVGPCPAHHRWSESHGGIHGGE*

>peptide 2 (56 aa)
MPEPEPATTKIKVEMNSANAAFKASGRVASSGRPMAMFLIGMIGRLRFKLQDARRVG

>peptide 3 (52 aa)
MSSSPPLVRKPRRDSWRRVMLPPMKAPKVTAGLTCPPEMLAPTETATKSPKA*

Sequence

>CNT30374560
GAAAAAGAGAGATTAATTCAGTAGTCTGTGGTTGGGAGCTGCTCGTGTGTGGTGTTGATGAAGAAAACTTCGTAGATGAGTCCAGCGATTCCACCGCCGA
CGAGAGGTCCGGCCCAGTAGACCCAGTGGTTGGTCCATGTCCAGCTCACCACCGCTGGTCCGAAAGCCACGGCGGGATTCATGGAGGAGAGTGATGTTAC
CACCAATGAAAGCACCGAAAGTGACGGCAGGGTTAACGTGTCCACCAGAGATGTTGGCACCAACTGAGACAGCGACGAAGAGTCCAAAGGCATGAGCCAC
TGCAGCAGCTACGAGACCAGAAGGAGTGGTGGCTCCGTTTTCAGTGAGCTTGTTGAAAGCCATGCCAGAGCCTGAACCGGCGACGACAAAGATCAAAGTT
GAAATGAACTCAGCCAACGCCGCCTTTAAGGCATCGGGACGGGTGGCTTCATCTGGACGGCCAATGGCGATGTTTCTGATCGGCATGATCGGACGGCTGA
GATTTAAGCTTCAAGATGCTAGAAGAGTGGGAG