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Detailed information on CNT30374327


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJL8|METK3_ARATH, E-value = 2e-40

BLAST vs NONCODE:
NONATHT001609, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30477236Arabidopsis thalianaArabidopsis halleri84.7692.5291.24445forward
CNT30355713Arabidopsis thalianaLactuca sativa17.921.7182.9894forward

Expression of CNT30374327

Peptides detected in this lncRNA

>peptide 1 (44 aa)
FLGYTIKITIQEIKREKKKKNKKEAKIQNIKLKSFICNLRLPDI*

>peptide 2 (30 aa)
DFLVTQSKLQYKRLRGKRKRKIKKRQKFKT*

>peptide 3 (30 aa)
MNRWPVFAKTNVNGDNAEAFFIQSFAIIMV*

Sequence

>CNT30374327
GATTTCTTGGTTACACAATCAAAATTACAATACAAGAGATTAAGAGGGAAAAGAAAAAGAAAAATAAAAAAGAGGCAAAAATTCAAAACATAAAACTCAA
ATCTTTCATTTGCAATCTTCGATTACCAGATATATGAACCGCTGGCCTGTGTTCGCGAAAACAAATGTGAATGGTGACAATGCAGAAGCTTTCTTTATTC
AGTCATTTGCAATAATAATGGTATAATGATAAGTTCCCAGTAGTTGGGGAGTGACTCAACTCAGTTCTTGCAATTGCCAGCTTTGTTTCTGTCTAGGCCT
TTGGCTTGAGCGGCTTGACAACCTCCCAAGTGAAGTCAAGGTTAATGGCCATCATTCCCGGCCTGAAGTCAAATGCTTCCTTGATCAACACAAGGATATC
CTTGTCTGGGATGGTCCCGGTCTTGTAGGTGTCAACAAACACTGAGAGCGGCTCAGGGACACCAATGGCGTATGATACCTGCACGATACAACGGCGTGCG
AGTCCTGCTGCTACCACGCTCTTTG