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Detailed information on CNT30374078


BLAST search results

BLAST vs Swiss-Prot:
sp|P59232|R27AB_ARATH, E-value = 1e-90

BLAST vs NONCODE:
NONGMAT000502, E-value = 5e-44

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30518728Arabidopsis thalianaJuglans regia41.2743.2588.93253forward
CNT30199476Arabidopsis thalianaPisum sativum43.0716.4985.98264forward
CNT3091075Arabidopsis thalianaSolanum tuberosum24.4739.5892150forward
CNT30263225Arabidopsis thalianaBrassica rapa44.8641.9284.73275forward
CNT30356771Arabidopsis thalianaLactuca sativa45.3525.6986.69278forward
CNT30410354Arabidopsis thalianaPapaver somniferum74.0642.9181.06454forward
CNT30725948Arabidopsis thalianaLupinus angustifolius45.3533.9488.49278forward

Expression of CNT30374078

Peptides detected in this lncRNA

>peptide 1 (40 aa)
EHKNIHKKNLDMKFKQVQHKIHNIQKQLPNSKKKAVFNSK*

Sequence

>CNT30374078
AAGAGCATAAAAATATCCATAAGAAAAACCTAGATATGAAATTCAAACAAGTTCAACATAAGATCCACAACATCCAAAAACAACTTCCAAATTCCAAAAA
AAAAGCAGTATTCAATTCAAAATGATAGAGATCGAGATGAAAATCATTCCTGAGCTCCTTCTTTCTGGTAAACGTAGGTGAGACCACACTTACCACAGTA
GTGACGATCGAAATGACTCGCCATGAAAGTCCCAGCACCACAGGTTGCGTTAGGGCACTCCTTCCTCAAACGCTGAACCTTACCTGAACCATCAACCTTG
TAGAACTGAAGAACAGCGAGCTTGACCTTCTTGTGCTTGGTGTAGGTCTTCTTCTTCCTCTTCTTAGCACCTCCACGGAGACGAAGGACAAGGTGAAGCG
TTGATTCCTTCTGGATGTTGTAATCGGCTAAGGTACGTCCGTCTTCGAGCTGCTTTCCGGCGAAAATCAATCGCTGCTGGTCCGGTGGGATTCCTTCCTT
GTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGAGGACTCGACCTCGAGAGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTT
TTTTGCTTTTACG