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Detailed information on CNT30374015


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 1e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547910Arabidopsis thalianaIpomoea triloba26.2819.1983.74123forward
CNT30712649Arabidopsis thalianaGlycine max22.8614.8884.11107forward

Expression of CNT30374015

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MSPAIPPPTRATAGFMEAPEKAPPAKMLAPTMKPIAMGAIVPRLPFLGSMAVA*

>peptide 2 (38 aa)
SKLQWPLLKPTDKDSSKRSNDHKPLDDSKLHKRKLKRH*

Sequence

>CNT30374015
GTCGAAATTGCAATGGCCACTCTTGAAACCAACGGACAAGGATTCATCTAAAAGATCGAACGATCATAAACCCCTTGATGATTCGAAATTACACAAACGG
AAATTAAAAAGACATTAAAATTCAAATTCAAAGTCGAATAAAATTACACAAGAGAGAAAAAGAGAGATTAATTCAGTAGTCTGTGGTTGGGAGCTGCTCG
TGTGTGGTGTTGATGAAGAAAACTTCGTAGATGAGTCCAGCGATTCCACCGCCGACGAGAGCCACGGCGGGATTCATGGAGGCTCCAGAGAAAGCTCCTC
CAGCTAAGATGTTGGCTCCAACAATGAAACCGATTGCGATGGGAGCAATTGTTCCAAGACTCCCGTTTTTGGGGTCAATGGCTGTAGCGTAGACGGTGTA
AACAAGCCCGAATGTCATCACGATCTCGAAAACGAAAGCGTTCAACACTCCTACTCCAGCAGAGAGAC