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Detailed information on CNT30374000


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9S7J7|CB22_ARATH, E-value = 2e-111

BLAST vs NONCODE:
NONATHT001041, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30268034Arabidopsis thalianaChenopodium quinoa10.4837.189.1392forward
CNT3070976Arabidopsis thalianaQuercus suber42.4873.4381.77373forward
CNT30379012Arabidopsis thalianaManihot esculenta60.3665.1979.81530forward
CNT30708305Arabidopsis thalianaGlycine max33.0335.8982.07290forward
CNT30539463Arabidopsis thalianaBrassica napus60.3673.4191.51530forward
CNT30238958Arabidopsis thalianaBrassica oleracea51.8251.5988.13455forward
CNT30264606Arabidopsis thalianaBrassica rapa5960.4488.42518forward
CNT3028352Arabidopsis thalianaTheobroma cacao24.4923.2483.72215forward

Expression of CNT30374000

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MSPGQPRVQRCPSRSLRGILRLGRTVYSPRMVLSTWDGLVRTCYKMNLV

>peptide 2 (50 aa)
MGPLPVTMAWTKNPNIENMARRPFLSSFTFSSEKASGSSAKFNGSNAPPG*

Sequence

>CNT30374000
CAAATACATAAGATAATTACTTTCCGGGGACAAAGTTAGTAGCGTAAGACCAGGCGTTGTTAGCCACAGGATCAGCCAAATGATCAAATAAGTTCTCAAT
GGGACCTTTACCAGTAACAATGGCTTGGACAAAGAATCCAAACATAGAGAACATGGCAAGACGACCGTTCTTGAGCTCCTTCACCTTCAGCTCAGAGAAA
GCCTCTGGATCCTCAGCCAAGTTCAATGGGTCGAACGCACCTCCGGGATAAAGCGGGTCAAGTCCTTCTCCGAGTGGTCCACCTCCGATTCTGTAGCCTT
CAATGAACCCCATGAGCACAACTTGAACAGCCCAGATGGCTAAGATGCTTTGCGCGTGGATCAAGTTAGGGTTTCCGAGGTAATCAAGACCTCCTTCTGA
GAAAATCTGAGAGCCTGCCTTGAACCACACGGCTTCTCCGAATTTAACACCGTTCTTGGAGAGAATTTCAGGGAATGTGCATCCGAGAGCACCCAACATA
GCCCATCTGCTGTGGATTACTTCAAGCTCACGGTTCTTAGCGAATGTCTCCGGTTAGGGTTTCCGAGGTAATCAAGACCTCCTTCTGAGAAAATCTGAGA
ACCTGCCTTGAACCACACGGCTTCTCCGAATTTAACACCGTTCTTGGAGAGAATCTCAGGGAATGTGCATCCGAGAGCACCCAACATAGCCCATCTGCTG
TGGATTACTTCAAGCTCACGGTTCTTAGCGAATGTCTCCGGGTCAGCCGAGAGTCCAGCGGTGTCCCAGCCGTAGTCTCCGGGGTATTCTCCGGTTAGGT
AGGACGGTGTATTCTCCGAGAATGGTCCTAAGTACTTGGGACGGTCTGGTCCGTACCTGTTACAAGATGAATTTGGTG