Detailed information on CNT30373968


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30519179Arabidopsis thalianaJuglans regia45.3467.9696.29700forward
CNT30200729Arabidopsis thalianaPisum sativum45.3428.7897700forward
CNT3048154Arabidopsis thalianaPrunus dulcis45.2166.5497.28698forward
CNT30285964Arabidopsis thalianaTriticum aestivum45.460.0795.72701forward
CNT30544510Arabidopsis thalianaBrassica napus45.2743.6999.57699forward
CNT30239033Arabidopsis thalianaBrassica oleracea45.2751.4799.43699forward
CNT30413997Arabidopsis thalianaPapaver somniferum45.483.9595.44701forward
CNT3036408Arabidopsis thalianaCucumis melo45.3466.2397.14700forward

Expression of CNT30373968

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MEREKGRGLDRHLLPEGRMSFGGTESLRVTVDNFSASEISTRNSFTNASKATNAMTRGEQAPMFVPTTSPRRRSRGQRCKPNSTIPSN*

>peptide 2 (50 aa)
MIYPHHDEISKITRACRPRCELVEYISVARVRPRTSKGITDLLLPQTSLA*

>peptide 3 (55 aa)
MRPFHKSGFVARISSRITTVIRVVVTIKQTITDLMSHSQFHSLNSFILTHAWLNL*

>peptide 4 (30 aa)
MMRRQHRGHAIRRVIMNHQSNGQSPRRPFI*

>peptide 5 (33 aa)
MTTGRINQVAFIDHGNSPPHPLKRNGKRERTRS*

>peptide 6 (41 aa)
MEPTNTSYPITTHTPNVQLTQNHQSFQLLYRSTRLRRKKTDE

>peptide 7 (43 aa)
MIRFSGLLATSRAANHPRRRDPNTSPDHSIGRSDGRCVQRAGT*

Sequence

>CNT30373968
CGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTTAGTGGACTTCTCGCGACGTCGCGGGCGGCGAACCACCCACGTCGCCGCGATCCGA
ACACTTCACCGGATCATTCAATCGGTAGGAGCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGTCAACGCGAGCTGATGACTCGCGCTTACTAGGAAT
TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTACCCGGGCCTGTCGGCCAAGGTGTGAACTCGTTGAATAC
ATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTGGCCTAAACGGCCATAGTCCCTCTAAGAA
GCCGGCCGTGAAGGGATGCCTCCACGTAGCTAGTTAGCAGGCTGAGGTCTCGTTCATTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG
CCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTCAATCCTTACTATGTCTGGACCTGGTAAGTTTCCCCGTGTTGAGATTGGGTAATT
TGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTTACCACCATGGTAGGG
CAGAAATTTGAATGATGCGTCGCCAGCACAGAGGCCATGCGATCCGTCGAGTTATCATGAATCATCAGAGCAACGGGCAGAGCCCGCGTCGACCTTTTAT
CTAATAAATGCGTCCCTTCCATAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGTAGTTACCATCAAACAAACTATA
ACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTCGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAGGA
TCAACCAGGTAGCATTCATCGATCACGGCAATTCCCCGCCACATCCTCTCAAACGCAATGGAAAGAGAGAAAGGACGAGGTCTTGACCGTCATCTTTTGC
CCGAAGGACGGATGAGCTTTGGCGGGACTGAATCACTTCGAGTCACCGTCGACAACTTTTCCGCATCCGAGATTTCAACCCGCAACTCATTCACCAATGC
GAGCAAGGCAACAAATGCGATGACGAGAGGTGAACAAGCGCCGATGTTTGTGCCCACGACTTCCCCACGAAGGAGAAGCCGCGGGCAAAGGTGTAAACCA
AACTCAACAATTCCTTCAAATTAGGTACGAAACACAGGCCCCGGAACTCATCATCGAGCGTAACATCGCCCGTGAATTAACTGAGAAGGATAGGTGGTAG
GTAGTTCGATGCGCGAGCATGGAGCCTACGAACACTAGCTATCCGATCACCACTCATACGCCGAACGTTCAATTAACTCAAAATCATCAATCGTTCCAAC
TACTCTACCGAAGTACTCGGCTAAGAAGAAAGAAGACGGACGAA