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Detailed information on CNT30373960


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 6e-69

BLAST vs NONCODE:
NONGMAT001209, E-value = 1e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30382128Arabidopsis thalianaManihot esculenta1925.3887.8899forward
CNT30706772Arabidopsis thalianaPrunus avium19.3928.7782.18101forward

Expression of CNT30373960

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MIPRRRVMLPPMKAPKVTAGLTCPPEMLAPTETATKSPK

>peptide 2 (31 aa)
MSSSPPLVRKPRRDSWRLQRKLLQLRCWLQQ*

>peptide 3 (38 aa)
MEAPEKAPPAKMLAPTMKPIAMGAIVPRLPFLGSMAVA*

Sequence

>CNT30373960
AACCCCTTGATGATTCGAAATTACACAAACGGAAATTAAAAAGACATTAAAATTCAAATTCAAAGTCGAATAAAATTACACAAGAGAGAAAAAGAGAGAT
TAATTCAGTAGTCTGTGGTTGGGAGCTGCTCGTGTGTGGTGTTGATGAAGAAAACTTCGTAGATGAGTCCAGCGATTCCACCGCCGACGAGAGGTCCGGC
CCAGTAGACCCAGTGGTTGGTCCATGTCCAGCTCACCACCGCTGGTCCGAAAGCCACGGCGGGATTCATGGAGGCTCCAGAGAAAGCTCCTCCAGCTAAG
ATGTTGGCTCCAACAATGAAACCGATTGCGATGGGAGCAATTGTTCCAAGACTCCCGTTTTTGGGGTCAATGGCTGTAGCGTAGACGGTGTAAACAAGCC
CGAATGATACCACGGAGGAGAGTGATGTTACCACCAATGAAAGCACCGAAAGTGACGGCAGGGTTAACGTGTCCACCAGAGATGTTGGCACCAACTGAGA
CAGCGACGAAGAGTCCAAAGG