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Detailed information on CNT30373827


BLAST search results

BLAST vs Swiss-Prot:
sp|O05000|NU2M_ARATH, E-value = 6e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30402960Arabidopsis thalianaBeta vulgaris22.7519.9791.85233forward
CNT30201983Arabidopsis thalianaPisum sativum38.9629.0896.74399forward
CNT30708145Arabidopsis thalianaGlycine max27.8310091.23285forward
CNT3091836Arabidopsis thalianaSolanum tuberosum38.9614.0197.49399forward
CNT30666432Arabidopsis thalianaTriticum dicoccoides26.6675.4193.77273forward
CNT30314569Arabidopsis thalianaCamelina sativa61.7239.0197.78632forward
CNT30463939Arabidopsis thalianaSaccharum spontaneum38.7730.8793.95397forward
CNT30651680Arabidopsis thalianaRosa chinensis13.8730.6797.18142forward
CNT30689350Arabidopsis thalianaTriticum urartu52.5434.3895.91538forward
CNT30483162Arabidopsis thalianaChara braunii14.7569.2782.78151forward
CNT30103440Arabidopsis thalianaOryza rufipogon52.5433.2196.1538forward

Expression of CNT30373827

Peptides detected in this lncRNA

>peptide 1 (46 aa)
LSGRTQTIIFQRKMHLRSNISSRLPWKIQTFFLMLRLHKNINFEAQ*

>peptide 2 (37 aa)
VRSYPNNNIPEENAPKIKYFEPASVENSDFLFDAAIT*

>peptide 3 (72 aa)
MSKMEVALMIKISGETAKKRLNMCGRIRTNSAFISPVWSTESLTLRSSAGRLHSRRRLGRIARPAAKPTMNI*

>peptide 4 (66 aa)
MNSKASNLSWSEESKHIEMVPAVLNNRKIWQKYVKLSLLKRLFQNKWAIVRRGAPAASRSKARNTK*

Sequence

>CNT30373827
TTGTCCGGTCGTACCCAAACAATAATATTCCAGAGGAAAATGCACCTAAGATCAAATATTTCGAGCCGGCTTCCGTGGAAAATTCAGACTTTCTTTTTGA
TGCTGCGATTACATAAAAACATAAACTTTGAGGCTCAATAGCTAAATACATGGCAATTAAATCATGAGCCGAGATCATAAAGAGCATACCGCGAGTAGGA
AGTGGAATTAATACAATGAATTCAAAAGCATCAAACCTCTCTTGGTCGGAAGAATCGAAACACATCGAAATGGTACCAGCCGTACTTAATAATAGAAAGA
TTTGGCAGAAATATGTAAAATTGTCCCTCCTAAAAAGATTATTCCAGAATAAATGGGCAATAGTTAGGAGAGGTGCGCCAGCGGCGAGCAGAAGCAAGGC
GCGCAACACTAAGTAATCCAAGCCAACCCACATTACTGGCTAACGGCGGATAATCATATTTCTTAGAGGTACTAAATACAACTCCATGAATGAGCAAAAT
GGAGGTTGCATTAATGATAAAGATCTCTGGGGAAACCGCTAAAAAAAGATTGAACATGTGTGGGAGGATCCGAACGAATTCTGCTTTCATTTCCCCCGTA
TGGAGCACTGAGTCACTTACGTTACGGTCTTCAGCGGGCAGGCTGCACTCTAGGCGACGGCTAGGAAGGATCGCTAGACCAGCAGCCAAACCAACAATGA
ATATATAATATAATGATAGTGATTCGGCTCAATAAAAAAATGTAGAAAAGAAAGGGCGGAATAGCATAATTGTCCGATTTATTCCTCGATCTTCTTTGAA
GACTTACTCCTCCTTTCCGAAAAGATCGTCCTTGGTCCTTTTGACATAAGATTCTCGGCCGCTCAAGAGACTCTCTCTCGTATATATATTTATACGCAAT
ATCTTGACTCCTACTACCCCTCCTTTCCGAAAAATTGATTGAGTCTTTGTCTAAGCGAGTTTTCTAGGCCGGGTGACCTGGCCACTTCTATTGCTTATCT
TTTCATTACATCTTTTGTTCTCTA