« Back to Arabidopsis thaliana search


Detailed information on CNT30373758


BLAST search results

BLAST vs Swiss-Prot:
sp|P85086|RCA_ARAHY, E-value = 6e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517378Arabidopsis thalianaJuglans regia45.2116.0785.88170forward
CNT30617865Arabidopsis thalianaSesamum indicum44.6861.9984.52168forward
CNT30282863Arabidopsis thalianaChenopodium quinoa42.828.4187.58161forward
CNT30727556Arabidopsis thalianaCorchorus capsularis89.143.1179.7335forward
CNT30524690Arabidopsis thalianaPhaseolus vulgaris34.0412.8583.59128forward
CNT30628493Arabidopsis thalianaVigna unguiculata30.0514.1291.15113forward
CNT30712287Arabidopsis thalianaGlycine max35.648.7288.06134forward
CNT3096945Arabidopsis thalianaSolanum tuberosum32.9845.4284.68124forward
CNT30185579Arabidopsis thalianaSecale cereale47.0746.3488.7177forward
CNT30295371Arabidopsis thalianaTriticum aestivum47.0744.4788.7177forward
CNT30223071Arabidopsis thalianaHordeum vulgare47.0723.7388.7177forward
CNT30564971Arabidopsis thalianaActinidia chinensis20.2126.3989.4776forward
CNT30171660Arabidopsis thalianaTrifolium pratense69.1579.5182.31260forward
CNT30144634Arabidopsis thalianaMedicago truncatula44.1542.1386.75166forward
CNT30439608Arabidopsis thalianaAegilops tauschii47.0714.7588.14177forward
CNT30662818Arabidopsis thalianaTriticum dicoccoides89.190.383.28335forward
CNT30310249Arabidopsis thalianaCamelina sativa26.334494.9599forward
CNT3074780Arabidopsis thalianaBrassica juncea45.4852.7892.4171forward
CNT30260820Arabidopsis thalianaBrassica rapa99.4732.9886.1374forward
CNT306924Arabidopsis thalianaZea mays47.0723.8983.05177forward
CNT30609928Arabidopsis thalianaGossypium raimondii5041.3282.98188forward
CNT30233037Arabidopsis thalianaAnanas comosus22.8728.4884.8886forward
CNT30218871Arabidopsis thalianaKalanchoe fedtschenkoi79.5268.7481.61299forward
CNT30212872Arabidopsis thalianaHelianthus annuus72.0754.9781.18271forward
CNT30684251Arabidopsis thalianaTriticum urartu72.8726.9281.75274forward
CNT30355370Arabidopsis thalianaLactuca sativa5051.9384.04188forward
CNT30371341Arabidopsis thalianaOryza glumipatula25.841.6384.5497forward
CNT30642662Arabidopsis thalianaCannabis sativa50.837.2389.01191forward
CNT3034456Arabidopsis thalianaTheobroma cacao33.2458.1487.2125forward
CNT3024431Arabidopsis thalianaPopulus trichocarpa44.683583.33168forward
CNT30120246Arabidopsis thalianaCitrus clementina48.446.6783.52182forward
CNT3038844Arabidopsis thalianaCucumis melo47.0724.6587.01177forward
CNT30150829Arabidopsis thalianaBrachypodium distachyon44.4135.3888.62167forward
CNT30604727Arabidopsis thalianaOryza punctata38.0353.5684.62143forward
CNT3039667Arabidopsis thalianaMarchantia polymorpha28.1946.983.96106forward

Expression of CNT30373758

Peptides detected in this lncRNA

>peptide 1 (38 aa)
FVLDLVSSEDTLADTDTVFTGRGPVELLHTSITDERSV*

>peptide 2 (46 aa)
MRGAYRVEKSLPVQMMGTRAFSSLLYIPGSWTLVGVALTIWLLTVY*

Sequence

>CNT30373758
TTCGTCCTTGATCTTGTCAGTTCTGAAGATACCCTTGCAGACACCGATACGGTCTTCACGGGTCGGGGCCCAGTAGAACTTCTCCATACGTCCATCACGG
ATGAGAGGAGCGTATAGGGTGGAGAAATCGTTACCAGTGCAAATGATGGGGACACGTGCGTTCTCTTCCTTGTTGTACATTCCTGGGAGCTGGACGTTGG
TTGGTGTTGCGTTAACCATCTGGTTGTTGACAGTGTACTGAGTAGTACCACCCATACGACCCGCACCAGCGTCAAGATCGTTGATGAAGAGACAACACAT
CTTTCCCTTCTTGATCAAGTCAGCTGCCTCACGGTACCTCTGACGGATAAGCTTTGCGGGTTCTCCTGCGTTTCCA