Detailed information on CNT30373658


BLAST search results

BLAST vs Swiss-Prot:
sp|Q03250|RBG7_ARATH, E-value = 3e-43

BLAST vs NONCODE:
NONBNAT007882, E-value = 7e-41

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30615905Arabidopsis thalianaSesamum indicum51.713.9483.21137forward
CNT30568254Arabidopsis thalianaActinidia chinensis36.619.5282.4797forward
CNT30508390Arabidopsis thalianaSolanum lycopersicum43.772.8284.48116forward
CNT30653585Arabidopsis thalianaRosa chinensis37.7410.8984100forward
CNT30155224Arabidopsis thalianaPrunus persica37.7418.4282100forward
CNT3023278Arabidopsis thalianaPopulus trichocarpa36.981382.6598forward

Expression of CNT30373658

Peptides detected in this lncRNA

>peptide 1 (73 aa)
SLTVMLRPSRSCPFIPSIASFMAFSSLKVTNPNPLDLPVSRSLMIFSRALSSVAHARPPTKHRYSTSPDAIEI*

>peptide 2 (35 aa)
LVNSDATAIEILSVHSLNRILHGFLILEGDESESP*

Sequence

>CNT30373658
CTCGTTAACAGTGATGCTACGGCCATCGAGATCTTGTCCGTTCATTCCCTCAATCGCATCCTTCATGGCTTTCTCATCCTTGAAGGTGACGAATCCGAAT
CCCCTTGATCTTCCAGTCTCACGATCGTTAATGATCTTCTCAAGAGCTCTGTCATCAGTGGCCCATGCTAGACCTCCAACGAAGCACCGATACTCAACAT
CACCGGACGCCATTGAAATTTGAAAAGAAGATCTAAGGGATTACAGTGAGAGTAGTGAGCAGTGA