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Detailed information on CNT30373394


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 1e-54

BLAST vs NONCODE:
NONGMAT000778, E-value = 3e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316236Arabidopsis thalianaCorylus avellana42.8852.5185.06241forward
CNT30711584Arabidopsis thalianaGlycine max44.6635.6582.47251forward
CNT30552635Arabidopsis thalianaOryza glaberrima44.6624.1884.86251forward
CNT30369654Arabidopsis thalianaOryza glumipatula44.6628.5284.46251forward
CNT30107537Arabidopsis thalianaOryza longistaminata44.6627.3183.67251forward
CNT30100253Arabidopsis thalianaOryza rufipogon44.6622.7884.86251forward
CNT30575129Arabidopsis thalianaOryza barthii44.6630.8484.86251forward
CNT30116094Arabidopsis thalianaOryza nivara44.6628.5284.86251forward

Expression of CNT30373394

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGLASMYRRLCLLGDLLITVRVDLSQTVSRKETTGSDLIISAPPMKSS*

Sequence

>CNT30373394
CTTCCTGATATCAGCCACCAAAACTGAAGCCTGAGTACCTGGCTCAAGAGGTCTGGGCTTAGCTGTGATCTGGGAAGCGTATATGACCCTTCTGGCTGTG
GGGATAACCTGACCACCTCCTCTGTGGATGGCATCAGAGTGAAGCACCACATCACATACCTCAAAACAGATACCTCTCATGTTCTCTTCAGCAAGAGGAC
CTTCCTTGGACGCCCACTGGAAACCAGCAACAACTGAATCCTTGATTTCGTTAAGGTACTGAACTCCCTTACACATATCGACAACCATGTTAGGCCCTGT
GGTTTCAGATCCTTGTCCCATCCAAACTCCTCAGCCAAGATCTTGGATCTGATCTTAGGGTCATCCCTTGGGCCAATACGTCCATCATCAATAGCCTCAG
CTAGACCTTCCTCCATGGGTCTTGCTTCCATGTACAGACGGTTATGCTTGTTAGGAGACTTACTCATAACTGTGCGAGTAGATCTATCACAAACTGTCTC
ACGGAAGGAGACCACAGGGTCTGACTTGATAATTTCAGCACCACCCATGAAATCATCCTGAA