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Detailed information on CNT30373037


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 3e-168

BLAST vs NONCODE:
NONGMAT000778, E-value = 1e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Arabidopsis thalianaSetaria viridis12.1733.3384.27248forward
CNT30640134Arabidopsis thalianaNymphaea colorata16.0547.5382.57327forward
CNT30547410Arabidopsis thalianaIpomoea triloba10.4139.9287.74212forward
CNT3019595Arabidopsis thalianaCitrullus lanatus19.1570.2781.28390forward
CNT30728649Arabidopsis thalianaCorchorus capsularis20.8639.0386.59425forward
CNT3071370Arabidopsis thalianaQuercus suber6.9757.7285.21142forward
CNT30405829Arabidopsis thalianaBeta vulgaris27.3967.5583.15558forward
CNT30636551Arabidopsis thalianaCapsicum annuum9.6729.8587.82197forward
CNT30543621Arabidopsis thalianaBrassica napus4.9639.4591.09101forward
CNT30510528Arabidopsis thalianaSolanum lycopersicum35.1555.5983.24716forward
CNT30665536Arabidopsis thalianaTriticum dicoccoides25.0977.5482.78511forward
CNT30312952Arabidopsis thalianaCamelina sativa24.449.1696.38497forward
CNT30263621Arabidopsis thalianaBrassica rapa12.3221.2291.63251forward
CNT30445994Arabidopsis thalianaSaccharum spontaneum24.434.984.31497forward
CNT3015244Arabidopsis thalianaZea mays11.2482.3786.03229forward
CNT30212259Arabidopsis thalianaHelianthus annuus22.6369.1281.34461forward
CNT30716232Arabidopsis thalianaMalus domestica golden22.6334.7785.68461forward
CNT30479087Arabidopsis thalianaArabidopsis halleri10.5573.8884.65215forward
CNT30361875Arabidopsis thalianaSorghum bicolor23.5143.4383.92479forward
CNT30705326Arabidopsis thalianaPrunus avium24.438.6885.11497forward
CNT3054398Arabidopsis thalianaAmborella trichopoda8.0523.9185.37164forward
CNT30557952Arabidopsis thalianaPanicum hallii15.8639.6382.66323forward

Expression of CNT30373037

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MQSTTTRAPSVIRRAAVTSEEKSTCPGESIRLMRYSFPSLAPVKLFKDSSVIS*

>peptide 2 (37 aa)
MLGDLLITVRVDLSQTVSRKETTGSDLIISAPPMKSS*

>peptide 3 (38 aa)
DRIKTKIFANTITKFSTRKKVKNIQGMAREKSSQSVIP*

>peptide 4 (33 aa)
MILTFIPVETLPAKTRPKAKNLPLSEAGIILDT*

>peptide 5 (35 aa)
MCSPDSSIVHTTIGSDLANLLRPSTNLGRSDATLH*

Sequence

>CNT30373037
GACAGAATCAAAACCAAGATATTTGCGAACACAATAACAAAGTTCTCAACTAGGAAAAAAGTAAAAAACATTCAGGGGATGGCGAGAGAAAAGTCTTCAC
AATCCGTCATACCATAAGAGTATTAATAAAACAAGACAAAATTAAGATAGAGAGAGTAGCAACCATTGGGAAAAAGGCTAGTACGAGTCTTGGTGAAGCT
TAAAGCTTGTCTTCGAACTCAGATAGTGGAGTCATCGCTTCCTTCAATCCCTTCCTCTTCCTGATATCATTTCCCAATGATCAAACACACACTGTGGGAA
TGCCTGTCCTGAGGTTGCTGCCCTAAGCTGACTTGAGAATCCGAAAGACTCCACAACAGGCAGGTATGCCTTGATGTTGTACAAGGGAGTTCCTGGCCTC
TGCATCTCCTCGAACACGTGTCCACGCTTCTGATTCAGCACACTGTAGATTCCTCCAAGAGCTCCCTCTGGTGCCTGGATCTCAACCATGTAAACCGGCT
CCAAAAGTCTGGGCTTAGCTGTGATCTGGGAAGCGTATATGACCCTTCTGGCTGTGGGGATAACCTGACCACCTCCTCTGTGGATGGCATCAGAGTGAAG
CACCACATCACATACCTCAAAACAGATACCTCTCATGTTCTCTTCAGCAAGAGGACCTTCCTTGGACGCCCACTGGAAACCAGCAACAACTGAATCCTTG
ATTTCGTTAAGGTACTGAACTCCCTTACACATATCGACAACCATGTTAGGAGACTTACTCATAACTGTGCGAGTAGATCTATCACAAACTGTCTCACGGA
AGGAGACCACAGGGTCTGACTTGATAATTTCAGCACCACCCATGAAATCATCCTGAAGATCCTTAAGACAAATCTCAAGATGGAGTTCTCCTGCACCAGC
AACAATGTGCTCACCTGATTCCTCCATTGTACACACAACCATAGGATCAGACTTGGCCAACCTCTTGAGACCCTCAACCAACTTGGGAAGGTCAGACGCA
ACCTTACACTGAACAGCAACACGAACAACAGGAGACACAGAAAACTTCATAGCACGAATGGGGTGAGCATCAACTTCCTTCTCATTAGTCAATGTAGCAT
TCTTGGTGATGAACTGATCCAGCCCAACCATAGCAACAGTGTTACCACAAGGGACATCCTCCACTGTCTCTTGCCTCTTACCCATCCAAATGACAGTCCT
CTGAACACTCTTAGTGTACAGATCCTTCTTCTCACCAGGGATATAGTTGGGACCCATGATTCTGACCTTCATACCAGTAGAAACCTTACCAGCAAAGACA
CGACCGAAGGCAAAGAATCTACCCTTGTCAGAGGCTGGAATCATCTTGGATACGTAGAGCATGAGAGGTCCATTGGGGTCACAGTTCCTGATGGCATTTG
CATACTGATCATCAAGAGGACCTTCATACAGATTCTCAACACGGTACCTCTGGGCAGTGTGGGGAGATGGCAAATGAAAGATCATCATCTCAAGTAGTGC
AGTACTTGCAGGGAGCCAAGTCTGCATAACACGCTTCATTAGAGGATCCTCGTATGTAGCCATGATGACATTAGCGTTCTCAATAACCCTCGAGAAAGTC
TGGTAAGCCTCCTCACCATCAACCTGAAGCTCAAGGAAACACCTGTCCATCTTGTTGACAGTCAAGACAGGTCGAATCCTCTCACCAAGAGCCTGACGTA
GAACAGTCTCAGTCTGAACACACACACCCTCAATGCAGTCGACCACCACAAGAGCACCATCAGTAATACGGAGAGCAGCAGTAACCTCAGAAGAAAAGTC
AACGTGCCCAGGTGAATCAATAAGATTGATGAGGTACTCGTTTCCGTCTCTGGCTCCAGTGAAACTCTTCAAGGATTCATCAGTCATCTCGTAGTAGAGA
GAAATACCAGTGGACTTGATAGTGATACCACGTTCAGCCTCATCAGCTCTGGTATCAGTCATACGAACATCACCAGCAACCTCTTGGGCAATGATACCAG
CAGCAGCAACCAAAGAATCAGTAAGAGTGGATTTCCC