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Detailed information on CNT30372016


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 4e-36

BLAST vs NONCODE:
NONGMAT000778, E-value = 2e-20

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Arabidopsis thalianaSetaria viridis26.0115.1388.6697forward
CNT30488117Arabidopsis thalianaOlea europaea24.6618.8586.9692forward
CNT30135610Arabidopsis thalianaLolium perenne42.918.9185.62160forward

Expression of CNT30372016

Peptides detected in this lncRNA

>peptide 1 (37 aa)
VDGIRVKHHITYLKTDTSHVLFSKRTFLGRPLETSNN*

>peptide 2 (39 aa)
GWHQSEAPHHIPQNRYLSCSLQQEDLPWTPTGNQQQLNP*

Sequence

>CNT30372016
GTGGATGGCATCAGAGTGAAGCACCACATCACATACCTCAAAACAGATACCTCTCATGTTCTCTTCAGCAAGAGGACCTTCCTTGGACGCCCACTGGAAA
CCAGCAACAACTGAATCCTTGATTTCGTTAAGGTACTGAACTCCCTTACACATATCGACAACCATGTTAGGCCCTGTGGTTTCAGACGGTTATGCTTGTT
AGGAGACTTACTCATAACTGTGCGAGTAGATCTATCACAAACTGTCTCACGGAAGGAGACCACAGGGTCTGACTTGATAATTTCAGCACCACCCATGAAA
TCATCCTGAAGATCCTTAAGACAAATCTCAAGATGGAGTTCTCCTGCACCAGCAACAATGTGCTCACCTGATT