Detailed information on CNT30372


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695440Zea maysOryza sativa49.1518.593.48230forward

Expression of CNT30372

Peptides detected in this lncRNA

>peptide 1 (54 aa)
GPRRARMASLAWSYVASCDAVTIMARLTVSEDPRQRLRTPSSRAIRPMASPTPR*

>peptide 2 (41 aa)
MVADTPEKRPAAPSDRRICAPTASGPGFRGGAGMSWWCGSAT

>peptide 3 (96 aa)
RAAARQDGLLGLVVRGQLRRRDDHGAVDGERGPAPEAAHALVARHPADGVADAAVVPALREGQAPVRLHPHHGHVGRPRSCGAAGGRRRSPGPTWS*

>peptide 4 (83 aa)
MATSAGQDLAVQREDAAVLPGPPGLEDVVQPHPRGGVERLPQHGGGHPREEARGALGPQDLRADGQRPGLPRRRRDVVVVRERD

Sequence

>CNT30372
CCGGGCCGCGGCGCGCCAGGATGGCCTCCTTGGCCTGGTCGTACGTGGCCAGCTGCGACGCCGTGACGATCATGGCGCGGTTGACGGTGAGCGAGGACCC
GCGCCAGAGGCTGCGCACGCCCTCGTCGCGCGCCATCCGGCCGATGGCGTCGCCGACGCCGCGGTAGTTCCGGCGCTCCGCGAGGGGCAGGCGCCCGTCC
GCCTGCATCCGCACCATGGCCACGTCGGCCGGCCAAGATCTTGCGGTGCAGCGGGAGGACGCCGCCGTTCTCCCGGGCCCACCTGGTCTTGAGGATGTCG
TACAGCCCCATCCGCGTGGTGGAGTAGAGCGTCTGCCGCAGCATGGTGGCGGACACCCCCGAGAAGAGGCCCGCGGCGCCCTCGGACCGCAGGATCTGCG
CGCCGACGGCCAGCGGCCCGGGCTTCCGCGGCGGCGCCGGGATGTCGTGGTGGTGCGGGAGCGCGACG