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Detailed information on CNT30371520


BLAST search results

BLAST vs Swiss-Prot:
sp|O49290|CPPM_ARATH, E-value = 3e-27

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30104541Oryza glumipatulaOryza rufipogon39.2923.4799.21253forward
CNT30118000Oryza glumipatulaOryza nivara99.5329.6398.13641forward

Expression of CNT30371520

Peptides detected in this lncRNA

>peptide 1 (59 aa)
TVYVRNHAPNPNIITHTAIYSYVPCNNNTYLTKFTNNAGELINVIHHISWLPDGQPHFD*

>peptide 2 (32 aa)
MSSQESRRWSSSRVVSARLRAARTSTRARAAA*

Sequence

>CNT30371520
TTACAGTTTATGTGCGGAATCACGCACCCAATCCCAACATAATCACTCACACAGCAATATATAGCTACGTACCATGCAATAATAACACATACCTCACAAA
ATTCACCAATAATGCAGGAGAATTAATCAATGTAATCCACCATATTTCATGGCTCCCTGATGGCCAGCCACATTTCGATTGATAATTTATTCCATTGGTA
GCTTGTTCTTGATCGATCTTAGTGTACCCCATTGGTAGCGCCATTGGTAGCTCCGTTTCCGGCGACGACGGCGGCCGCCTTGGCCTTAGCCTTCTCCATC
TCCGTCGTGGTCGTCGTCTCCGGCGCCGGCAGTGGCTTGGGAACGGAGGAGTTGACGGAGAAGCGGGCCTCGATGTCGAGCCAGGAGTCGAGGCGGTGGA
GCTCGTCGCGGGTGGTCTCGGCGCGCTTGAGGGCGGCGAGGACGTCGACGAGGGCGCGGGCGGCGGCGTAGACGGTGGTGAGGGGGGACTTGATGAGGTG
GAACCCCATCTCCATGAGCTCCTGCCTCGTGTGAAGCGGCGTCTTCCCGCCCTCCAGCATGTTGCACACGCGATAACCCTTGGTCCTCCTGCAGATCTCC
ATCAGCTCCTCGTCGCTCCGCGGCGCCTCCACGAAGCACGCGTC