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Detailed information on CNT30371519


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697886Oryza glumipatulaOryza sativa77.8141.3994.3298forward
CNT30597173Oryza glumipatulaOryza meridionalis10075.8499.48383forward
CNT30104637Oryza glumipatulaOryza rufipogon10065.1498.96383forward
CNT30578440Oryza glumipatulaOryza barthii10065.1499.74383forward
CNT30117979Oryza glumipatulaOryza nivara10093.4199.22383forward

Expression of CNT30371519

Peptides detected in this lncRNA

>peptide 1 (72 aa)
ADLLLIVFLRSLAGSPLPGGRRRRWMLVGFTGSHSVRGSPFSQRQATIHGGEVFQAACSAPLLEVSVLFYED*

>peptide 2 (70 aa)
RGFAPHRLSPLSRRLTATRRPPAEMDASWIHREPFSPRLSLQPTASDDPRRRSISGGLLCSPVGSFSSVL*

Sequence

>CNT30371519
CGCGGATTTGCTCCTCATCGTCTTTCTCCGCTCTCTCGCCGGCTCACCGCTACCCGGCGGCCGCCGGCGGAGATGGATGCTAGTTGGATTCACCGGGAGC
CATTCAGTCCGAGGCTCTCCCTTCAGCCAACGGCAAGCGACGATCCACGGCGGCGAAGTATTTCAGGCGGCCTGCTCTGCTCCCCTGTTGGAAGTTTCAG
TTCTGTTTTATGAAGATTAGAAATTTCAGTTTATGATCTAGGAAAAGGAAATCCAGCCATGTGAGTATGTGACTTCAATTATAAATTTAGCTTATATTTA
TTCGAAATATCTGAGGGCATGCTCACCAGTCACTATTTCACTTCATGTTGTGAACATCAGTATTATCAGTCTACCAGATATGT