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Detailed information on CNT30371509


BLAST search results

BLAST vs Swiss-Prot:
sp|P51414|RL261_ARATH, E-value = 6e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690207Oryza glumipatulaOryza sativa41.2875.3994.98239forward
CNT30522907Oryza glumipatulaSetaria italica48.3649.5689.64280forward
CNT30536141Oryza glumipatulaEucalyptus grandis34.254.5581.82198forward
CNT3044269Oryza glumipatulaPrunus dulcis26.9426.1382.05156forward
CNT30181670Oryza glumipatulaSecale cereale43.8788.8191.34254forward
CNT3082886Oryza glumipatulaBrassica juncea25.3957.286.39147forward
CNT30230907Oryza glumipatulaAnanas comosus28.1554.8887.12163forward
CNT30714885Oryza glumipatulaMalus domestica golden30.5736.3484.75177forward
CNT30720826Oryza glumipatulaTriticum spelta57.1755.5489.12331forward
CNT30597158Oryza glumipatulaOryza meridionalis64.5954.5297.06374forward
CNT30355705Oryza glumipatulaLactuca sativa3860.2779.55220forward
CNT30105031Oryza glumipatulaOryza longistaminata61.3146.0496.34355forward
CNT30318720Oryza glumipatulaAsparagus officinalis14.8535.5483.7286forward
CNT30149302Oryza glumipatulaBrachypodium distachyon61.6659.790.76357forward
CNT30115704Oryza glumipatulaOryza nivara20.5535.2197.48119forward

Expression of CNT30371509

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MGMERTLYLWRSSVERAADMRTRRTEDGAVKCAFRHFRRELVTRGLRFMAAAAA

>peptide 2 (35 aa)
LNHDQLTHNEFLIIYQNGRHHRQNISSKTLRNDRL*

>peptide 3 (44 aa)
MALRSLSSLSLVTTTLDGWIPTLTVEPFTFSLVMRSTWITHRRR*

Sequence

>CNT30371509
CTAAACCATGATCAATTAACACATAATGAGTTTTTAATAATCTATCAAAATGGAAGACATCACAGACAAAATATCAGTTCCAAAACTCTCAGAAATGATA
GATTATGATAATAATTCTTTCAAGCAAGTAGCATAAACTTGTAACAGAGGAAGCAGTGACAACTGACAAGGTGGTACAAATCCCCCTCCCTAATCGATCT
CCTGGAGCGAGGATGGCCTTGCGGTCCTTGTCGAGCTTGAGCTTGGTGACGACCACCTTGGACGGGTGGATCCCGACGTTGACGGTGGAGCCGTTCACCT
TCTCCCTCGTGATGCGCTCGACGTGGATCACCCACCGGCGACGGTAGACCTGCACCACCTTCCCCTCGCGGCCCTTGTAGCTCCCCCTCACCACCTGCAC
CTCGTCGTCCTTGCGGATGGGGATGGAGCGGACGTTGTACTTGTGGCGGAGCTCGGTGGAGAGGGCGGCGGACATGAGGACGCGGCGGACGGAGGACGGC
GCCGTGAAGTGCGCCTTCCGGCACTTCCGCCGGGAGCTCGTCACGCGTGGGTTGCGCTTCATGGCGGCGGCGGCGGCGG