Detailed information on CNT30371505


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674232Oryza glumipatulaSetaria viridis78.953998.46195reverse complement
CNT30308381Oryza glumipatulaTriticum aestivum78.5467.698.97194forward
CNT30384202Oryza glumipatulaTriticum turgidum79.3511.8498.47196reverse complement
CNT30538116Oryza glumipatulaBrassica napus79.3516.1795.41196forward
CNT30553653Oryza glumipatulaOryza glaberrima52.236.63100129forward
CNT30647597Oryza glumipatulaRosa chinensis78.5438.0493.81194forward
CNT30576588Oryza glumipatulaOryza barthii52.2329.38100129reverse complement
CNT30604605Oryza glumipatulaOryza punctata68.0272.7398.21168reverse complement
CNT30333260Oryza glumipatulaCynara cardunculus24.78.3693.4461forward

Expression of CNT30371505

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MGESLTEQCRVEVEGPRVVNFFSRRRNNDGI*

Sequence

>CNT30371505
AAGGACTTAGGGGAGAAATCCGCCCAAGGAGGGGCTCGTGTCTGATTAGCTAGTCCGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACT
CCTACGGGAGGCAGCAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTGGAAGGCCCACGGGTCGTCAACTTCTTTT
CTCGGAGAAGAAACAATGACGGTATCTGAGGAATAAGCATCGCCGGA