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Detailed information on CNT30371494


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 6e-51

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521203Oryza glumipatulaSetaria italica21.916.2786.67150forward
CNT30555750Oryza glumipatulaOryza glaberrima72.2633.0299.6495forward
CNT307019Oryza glumipatulaZea mays2012.3186.13137forward
CNT3067646Oryza glumipatulaLeersia perrieri9.0530.196.7762forward
CNT30597219Oryza glumipatulaOryza meridionalis41.0226.7995.37281forward
CNT30151097Oryza glumipatulaBrachypodium distachyon17.5229.4889.17120forward
CNT30104556Oryza glumipatulaOryza rufipogon39.8510096.7273forward
CNT30578486Oryza glumipatulaOryza barthii71.8249.8599.19492forward
CNT30118036Oryza glumipatulaOryza nivara64.5360.6398.87442forward
CNT30604884Oryza glumipatulaOryza punctata22.0422.1488.08151forward

Expression of CNT30371494

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MHLILPPLLTLPKPELVERRLTGRPAVDLSPWNGATEVAEEAITVGAIAT*

>peptide 2 (34 aa)
IHFFYCRRIYQICSRYISCVYIAGALFSHILTQR*

Sequence

>CNT30371494
CCATCCATTTTTTTTATTGTCGACGAATTTATCAGATATGCTCTAGATACATATCTTGTGTGTATATAGCCGGAGCTTTGTTTTCACATATCCTCACCCA
ACGATAATTGTAGTACTCTTACAATAATAACTGGTCGGAGAGGGAGGGAAGAGATTATTACATATGTGTTAAGAGCAGAGGCAAGGCACCCACTTGGACC
GAAGCAGGTACTCGATCTGCTTCAAGAGATCCTCCACGGTGAGTGGTGGCAGGTACGATAGGGTCTCGAACTTCTTGATGCCCTCAATTGGCCACACCTG
AATAAATAATGTAAAAATTTAAATCAGGTTAATTTGAATTTCGTAACATGAGTTAATTTGATCCTTGACTTTAAAGGAGAAGCCTGAGGAGGTATATATC
ATATATACCTGCATGCACTTGATCCTTCCGCCATTGCTGACGTTGCCGAAGCCCGAGTTGGTGGAGCGGCGGCTGACGGGGAGGCCGGCGGTGGACTTGA
GCCCTTGGAATGGAGCCACGGAGGTGGCCGAGGAGGCCATCACGGTGGGGGCCATAGCCACGTAGTTAGCTAGCTAGCTTACTGGCTAGTAGTAGTAGAG
TATGTCCAGTAGCAGTGCTGTTGAGGCCCTGTACGCTGGTTCACCAGCAGCTTATATAAACAGCAATCGTATCATGTCATTTCAT