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Detailed information on CNT30371486


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697494Oryza glumipatulaOryza sativa48.2965.5797.08240forward
CNT30555645Oryza glumipatulaOryza glaberrima60.3658.25100300forward
CNT30450733Oryza glumipatulaSaccharum spontaneum11.272091.0756forward
CNT30106587Oryza glumipatulaOryza longistaminata58.3574.7494.14290forward
CNT30104741Oryza glumipatulaOryza rufipogon50.576.0697.21251forward
CNT30604867Oryza glumipatulaOryza punctata44.6758.1283.33222forward

Expression of CNT30371486

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MLSHQPPNRRKNRNRTGPEPNRTGRGRRSQPTSERP

>peptide 2 (54 aa)
HSRATKIHNHDKLNNSMDLTRAEHTKIHSFIHLIKANETSFLLAIKNTDGQPHS*

>peptide 3 (79 aa)
MRAPPLSSSSSRRSCRRRGCRSHRRSRRHHGRRRSSGTQHPAPPCFPTNPRTEEKTEIEPDPNRTEPGGGGEANPPLRDH

Sequence

>CNT30371486
TTCATTCCAGGGCAACCAAGATTCACAACCATGACAAATTAAATAATTCGATGGATTTGACGAGAGCGGAGCACACTAAGATTCATTCATTCATTCATTT
GATCAAAGCAAACGAGACGAGCTTTCTTCTTGCGATCAAAAACACAGATGGGCAACCACACAGTTAACACAAACTAGATAGTTCCACACAAAACTAACGA
TGATAACGATCGGATGATGATGATGGTAGCTCGATTAGATAGATAGATAACTTGGCCATGAGGGCCCCACCGCTCAGTTCCTCCAGTTCCCGTCGGAGTT
GCCGCCGCCGCGGCTGCCGTAGCCACCGCCGTAGCCGCCGCCACCACGGCCGCCGACGAAGCAGCGGTACTCAACATCCGGCGCCGCCATGCTTTCCCAC
CAACCCCCGAACCGAAGAAAAAACCGAAATCGAACCGGACCCGAACCGAACCGAACCGGGAGGGGGAGGAGAAGCCAACCCACCTCTGAGAGACCAC