Detailed information on CNT30371482


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555662Oryza glumipatulaOryza glaberrima96.0110098.87529forward
CNT30597179Oryza glumipatulaOryza meridionalis99.0999.4598.35546forward
CNT30104732Oryza glumipatulaOryza rufipogon89.1110098.37491forward
CNT30578566Oryza glumipatulaOryza barthii95.110098.85524forward

Expression of CNT30371482

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MSRRKLQSDEWWRIHARPCWYGRSDGYRRVVTEDIVADRSEREQHTRMCKNLSNNTSKL*

>peptide 2 (76 aa)
LTLHRFQLLLLLDFFILWQQWRRVAGCRHPETGEQSRRGGAAARDEQEEAAERRVVAHPRAAVLVRAERWVSPGSD*

>peptide 3 (45 aa)
FNTPPLPATSSFRFLYPVAAVAKGSWLPAPRNRRAEPAWWGGSEG*

Sequence

>CNT30371482
TTTAACACTCCACCGCTTCCAGCTACTTCTTCTTTTAGATTTCTTTATCCTGTGGCAGCAGTGGCGAAGGGTAGCTGGTTGCCGGCACCCAGAAACCGGC
GAGCAGAGCCGGCGTGGTGGGGCGGCAGCGAGGGATGAGCAGGAGGAAGCTGCAGAGCGACGAGTGGTGGCGCATCCACGCGCGGCCGTGCTGGTACGGG
CGGAGCGATGGGTATCGCCGGGTAGTGACTGAAGACATCGTTGCTGATAGGTCTGAAAGGGAGCAGCACACCAGGATGTGCAAGAACCTATCAAACAACA
CTTCGAAGCTCTGAGGTTTCAACTTCAGAGTTTACAACCCACACTCTGCTCCACATTTCATTTCTATCATGGGAGATGTCAAATAATTGTTGTAATGATT
TGAGAAGACAAGTAGAGAATAAATAAATGAGTAGCCGAACATTATTCATGTACTATGTAGTTGAATCCATCAGGAGAGAAAGATATTTTTCTCATAAACA
GGGTTGATCGGAAGTTAAAAATCAATAATGACAAAGAACATGAGCATTTAT