Detailed information on CNT30371473


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003983, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554817Oryza glumipatulaOryza glaberrima73.1226.9598.812187reverse complement
CNT30577135Oryza glumipatulaOryza barthii9.8397.0394.9294reverse complement

Expression of CNT30371473

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MKEITLISSDEKRSKKTTKGHNHANLALWSIFDLDRQFNLAHIRDGGFEKSKELSIYSQLQ*

>peptide 2 (36 aa)
MLQNNINMQGLMGYSLKNQGICNRRDMKVTNFCPEK*

>peptide 3 (42 aa)
MLEFLQKIKNLFRKGVTLSQWTEDFPQVKIIFRQWCLTKHNN*

>peptide 4 (44 aa)
MQSERYESDKLLSGEIRSKKTLKGQLSCSPSIMHHKMILADNII*

>peptide 5 (54 aa)
MRSKIVSEEMRSKKTVKGENHSHLALWTIFYLVRKCHLAKIYIQQIRDSSMINF*

Sequence

>CNT30371473
GGTCAAAATCACCCAGATTTTTTCCTACCGTTAGATTAAGATCCAGAGGACACAAAAAATGCTACATATTTTTTTTCTCTGACTAGTCAGATCACAAAAC
TACATGGGCTCGAATTCTAGCCCATAGAACAATACAAAAAATTATACAGACCATAACTGTAAATACATCACGGCCCATTATGATCAACTTCACATCCAAT
AAAGGTCAGAAAAAAACAAAATAACACAGGGAGACCACACCAGTTCGCACAAAACCCCCAGATCGAGCAAAACAAATCGAGCACGCCATAGACAGTGAGG
AGAACGAGAAAAAGAAGAAGAAGCAAATTCTTACCAAGTACATTGAGGTCAAGAAGTTGAAATCAACAAGACATAATCTTCCAGGTAACAAATTACCTAG
CACAAAATCCACCTTTACCTTTCCCCCATTGACTTCACCATATTCTGCCAGTCATCTTTTAAATCAAACAAAAACAACTCAGTTCTGTAAAAATATTGGA
GAAAAGCACTTGGAATAGTGAATTTCTTTTGGAGAAAAGTGCTTGGAATAGGAAATTTCTTTAGATCAAGTAGTTAAAAGTATGTAACTTTTCCAGAAAA
ACTCGTAACAAAAACTATCAATCTATAGTCAGTTACAGTTACAAATAACAAAAGATACATATATAACTACAATACATCTAAACTGTAACTGGGCTCTAAA
TGGAATCATTCTTAAATTTCTTAAAAAATTCAGTACTTATACTGCGACATTAAAACATTTCCCCAATTATAACAAACTCTAAATTATGTTACAAATATAT
AAAGAGCTATCTATCTATAGTCAGTTACGGTGAGAAATAACAAAAGTTACAGATGTAACTACTGTACATCTAACTGTAACTGGGCTGTAAATGGAATCAT
TCTTAAATTTCTTAAAAAATTCAGTATTCATGCAGCAACATTAAAACACTTTCCCCTAGTATAACAAGCTCTAAATTATGTTACAAATATATAAAGAACT
ATCTATCTACGGTCAGTTACAGTGAGAAATAACAAAAGTTACAGATGTAACTACAGTACATTTGAACAGTAACTGGGTTATAACTGGAATCATCCTTTGA
TTTTTTTTTTAAAAAAATTCAGTACTCATGCACTAACTTTTTTTTTGCCTATGACAAAATGTTCTAAATTATATTACAAATAACCTAATCATGTAGGGTC
AGGTATATTGCAATCTCAAAAATCAGGAGATACACAATCAGATGGATATGAAATGAGAAGCAAAATTGTGTCTGAAGAAATGAGAAGCAAGAAGACAGTT
AAAGGTGAGAATCATTCTCACCTAGCATTATGGACCATTTTTTATCTTGTCAGAAAATGTCATCTAGCAAAAATTTATATACAACAAATTAGAGATAGTA
GCATGATAAATTTTTAAAGAACTATATATCTATATCCAGTTACAGTGAGAAATAACAGAAATTACATATGTAACTACAGTACATATTGACTGTAACTGGG
CTTTAACTGCAATCATGCTTGAATTTCTTCAAAAAATTCAGTACTCATGCAACAGCATTAACATTTTTTACTATTATGACTTTTTCTAAATTGTACTACA
AATGATTGAAACATGCAACGCCTGTTAGATTAGAAGCTCAAGCAACAGTGAATACAGAGTCAAATAGATGTCAAAGTGACAAAATTTTCTCAGAAGAATT
AATAAGCAAGAAGACACTTGAAGGTCAGAACAATGGACAGATAGCATTATGCACCAAATTTGATCTTGTCAGTCAATAAAATCTAGCACAATTTTGTATA
CATGAAAGCATGATTTTTTTTTTGAAAAACTATCTATCTCCAGTTACAGTGAGAAGTAACAGAAGTTACATATGTAACTACATTACATATTGACTGTAAC
TGGGATGTAACTACAATCATGCTTGAATTTCTTCAAAAAAAAATTTGTCTAATATACATTATCTAAATTATATTACAAATAACCTATCTATGCAGGTTCT
GTTACAATTCGATCTCAAGTAACAGTGGATACATAATCAGAGAGATATGAAAGAGATAACATTAATTTCGTCTGATGAAAAAAGAAGCAAGAAGACAACT
AAAGGTCATAATCATGCTAACCTAGCATTATGGTCCATATTTGACCTTGACAGACAATTTAATCTAGCACATATTAGAGATGGCGGCTTTGAAAAATCTA
AAGAGCTATCTATCTATAGTCAGTTACAGTGAGAAATAAGAAAAGTTACATATGTAACTACATTACATCTGAACTGTAACTAGGCTATAACAGCTTTCAT
GCTTGAATTTCTTCAAAAAAATTCAGTACTCATGCAGCAGCATTAAATATTTTCCCCTATTATAACAAGTTCTAAATTATGTTACAAAATAATATAAACA
TGCAGGGTCTGATGGGTTACAGTCTGAAAAATCAGGGGATATGCAATCGGAGAGATATGAAAGTGACAAACTTTTGTCCGGAGAAATAAGAAGCAAGAAA
ACATTGAAAGGTCAGTTATCATGCTCACCTAGCATTATGCACCATAAAATGATCTTGGCAGACAATATAATCTAGCATAAAATTATATACAACAAATTAG
AGATTGTAGCGTTGATAAATTTTCAAGGACTATATATCTATAGTTAGTTACAGTGAGAAATAACAAAAGTTACATATGTAACTACAGTACATATAGACTG
TAACTGGGCTAAAACTGCAAGCATGCTTGAATTTCTTCAAAAAATAAAGAATTTGTTCAGAAAAGGAGTCACTTTGTCACAATGGACTGAAGATTTTCCT
CAAGTGAAAATCATCTTCAGACAGTGGTGTTTAACAAAGCACAACAATTAGATTAGAGCCTAGGATAAAAAAAACAGAGCATTGTGGTCCAAACGGTCAT
ATCTCCAGTTGTGTACAAATTTGCCCATATATTAAATTTTGTACATAATTTGCACATATCTCAAACTTCTGTGCACAGATATTAAAATCAC