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Detailed information on CNT30371470


BLAST search results

BLAST vs Swiss-Prot:
sp|O49290|CPPM_ARATH, E-value = 4e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555734Oryza glumipatulaOryza glaberrima75.4349.0499.54436forward
CNT30118018Oryza glumipatulaOryza nivara73.3619.5599.53424forward
CNT30604894Oryza glumipatulaOryza punctata81.6619.4386.44472forward

Expression of CNT30371470

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSSQESRPTRLLNSAKVVRRWNPISMSSCLV*

>peptide 2 (59 aa)
TVYVRNHAPNPNIITHTAIYSYVPCNNNTYLTKFTNNAGELINVIHHISWLPDGQPHFD*

Sequence

>CNT30371470
TTACAGTTTATGTGCGGAATCACGCACCCAATCCCAACATAATCACTCACACAGCAATATATAGCTACGTACCATGCAATAATAACACATACCTCACAAA
ATTCACCAATAATGCAGGAGAATTAATCAATGTAATCCACCATATTTCATGGCTCCCTGATGGCCAGCCACATTTCGATTGATAATTTATTCCATTGGTA
GCTTGTTCTTGATCGATCTTAGTGTACCCCATTGGTAGCGCCATTGGTAGCTCCGTTTCCGGCGACGACGGCGGCCGCCTTGGCCTTAGCCTTCTCCATC
TCCGTCGTGGTCGTCGTCTCCGGCGCCGGCAGTGGCTTGGGAACGGAGGAGTTGACGGAGAAGCGGGCCTCGATGTCGAGCCAGGAGTCGAGGCCGACGA
GGTTGTTGAACTCGGCGAAGGTGGTGAGGCGGTGGAACCCCATCTCCATGAGCTCCTGCCTCGTGTGAAGCGGCGTCTTCCCGCCCTCCAGCATGTTGCA
CACGCGATAACCCTTGGTCCTCCTGCAGATCTCCATCAGCTCCTCGTCGCTCCGCGGCGCCTCCACGAAGCACGCGTC