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Detailed information on CNT30371466


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30596893Oryza glumipatulaOryza meridionalis35.3810.5694.2138forward
CNT30109132Oryza glumipatulaOryza longistaminata35.6417.3194.96139reverse complement

Expression of CNT30371466

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MCYAETILLNFMYVYRKHARMLAGQLDQTV*

>peptide 2 (33 aa)
MRGCWQGSWTKQFSNKISQKSTGFGNLVAYGQLS

>peptide 3 (56 aa)
YWCNTKAFLTPFHRWETILSHCVRLCLDPKFDPNFSPFPSHQLVIHITFQSHHLQF*

Sequence

>CNT30371466
ATATTGGTGCAATACAAAAGCTTTTCTGACCCCTTTCCATCGGTGGGAGACAATACTTAGCCATTGTGTTAGGCTGTGTTTAGATCCAAAGTTTGATCCA
AACTTCAGTCCTTTTCCATCACATCAACTTGTCATACACATAACTTTTCAGTCACATCATCTCCAATTTTAACCAAAATCCAAACTTTGCGCTGAACTAA
ACACAGTTTTAGTCTATTTCACTGCTAGACTGTACATGTGTTATGCTGAAACTATTTTGTTGAATTTTATGTACGTATATCGAAAGCATGCGAGGATGTT
GGCAGGGCAGTTGGACCAAACAGTTTAGTAATAAAATCTCACAGAAATCCACTGGATTCGGTAACCTTGTTGCGTACGGTCAATTATCAG