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Detailed information on CNT30371462


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43766|NLTP3_HORVU, E-value = 2e-28

BLAST vs NONCODE:
NONORUT005401, E-value = 1e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697225Oryza glumipatulaOryza sativa3862.3895.75635forward
CNT30555882Oryza glumipatulaOryza glaberrima16.9410099.29283forward
CNT30597256Oryza glumipatulaOryza meridionalis27.5390.296.74460forward
CNT30109910Oryza glumipatulaOryza longistaminata8.9864.9496.67150reverse complement
CNT30104065Oryza glumipatulaOryza rufipogon12.8110098.6214forward
CNT30578372Oryza glumipatulaOryza barthii55.7268.1192.48931forward
CNT30117882Oryza glumipatulaOryza nivara10.414098.85174forward

Expression of CNT30371462

Peptides detected in this lncRNA

>peptide 1 (81 aa)
MIYLLQSVERLMGKPTLTPHLPGTPATVPRLRDLMVPARVLRQRQAAWRSAVVRAALFSPLTPLQHPWVRPPTGRSRRGRS*

>peptide 2 (44 aa)
LFYACKIIEMIFYIYSRITLNNFVAYHNEGVLLLQISSARSWSS*

>peptide 3 (68 aa)
MAAMVVCGPARSRAAATRATNTSCARAISILVVCVDDRSTCCCWCVVLDRLLLQVRSIDENSRECRGL*

>peptide 4 (36 aa)
MHIYRKLVILWENVSYLEQYLIVAFIPPPTLIAIKK*

Sequence

>CNT30371462
CTTGTTTTATGCCTGTAAAATAATAGAGATGATTTTCTATATATATAGCAGGATCACATTAAACAATTTTGTTGCGTATCACAACGAGGGAGTACTACTA
CTGCAGATTTCCTCAGCAAGAAGCTGGAGTAGCTAGTAGCTAGGACCAAAACATTTGGACAACATGCAATTCATAAAACGTATAGGATTACACGTAGTAC
ACACAGATCGTGTACATACTGAAGAAAATTAAGATAGAACATGCACACAGGGAGCGTGCAACATAAAGTATACAGCTGATACAGAGAGAGAATGGAGCGC
TGCATGTCTGCCGCAGCTGTTATTTTAATTACTTTGTTCATATATGCTGTAGCAAGTACGTGCTTAATTACTAGCTGATCAACTCCGATCGAGGTAGCGT
GTTAAGCTCGATCGATCGATCCAAGCAGGATTAATTGATCTAGCTGACCCTGCACCAAAGAAAAAAAATGCATATATATAGGAAGTTAGTTATTTTATGG
GAAAATGTTTCATATCTCGAGCAATATCTCATTGTTGCTTTCATCCCCCCCCCCACCTTAATAGCCATTAAAAAGTAAAACAAAATAATAAGATAGATTA
ATATTAAATATGCATGTCTATAAATATACATGTTTAAATTAAACTTGTATAAGTTGTAACAATAATAACATATATAATAGCGAAAATACGTTAACTAGTG
TTAGTTTAGTTTGTTTTTTAATTTAACTTGTATAAGTTGAATTTAATCTTTTATGTCTATGAAGTGAGATATATCTCACATATGGTAATCTATCTTAACT
TGTAAAAGTTTTATTAACTATTACTTTGTTTTAGATTATAAGACGTTTTGACTTTGGTCAAAGTTAAAATACTGTAAGTTTTACTGATTTTGTAGAAAAA
AAGTAGTAACTTTTTTAACCCATGATAAATATATTATGAAAATTTATTCAATTATGGATTTAATGAAACTACGATGGTATTGTAAATATTATTACTTTTT
TCTACAGAATTAGTTAAACTTAGAAAAGTTTAACTTTGACCAAAGTTAAAACGTCTTATAACCTGAAACGGAGGGAGTATTTAGATAGCATGTAAAAAAT
AAAGAGATATATGCGTGTATATATATATAAAGAGAGAGAGAGAGGAGTCATAGAGAGATGATATACTTGTTGCAGTCGGTGGAGAGGCTGATGGGGAAGC
CGACGTTGACGCCGCACTTGCCGGGGACGCCGGCGACGGTGCCGAGGTTGAGAGACTTGATGGTGCCGGCGAGGGTCTTGAGGCAGCGGCAGGCGGCCTG
GCGGTCGGCGGTGGTGCGGGCGGCGTTGTTCAGCCCCTTGACGCCGTTGCAGCATCCCTGGGTGAGGCCGCCGACGGGCCGGAGCCGCCGCGGGCGTAGC
TGAGGCAGGGCGACACGGCGGAGTTGACCTGGCCGCAGCTGATGGCGGCCATGGTGGTGTGTGGGCCCGCCAGGAGCAGAGCCGCTGCCACGAGGGCGAC
CAACACCAGCTGTGCACGAGCCATCTCGATCTTGGTCGTGTGTGTTGACGATCGATCGACTTGCTGCTGCTGGTGTGTGGTGCTCGATCGTTTGCTGCTG
CAGGTGAGATCGATCGATGAGAATTCCCGGGAATGTAGGGGGCTTTAAATAGCTATTATTTCATCTGTGCC