Detailed information on CNT30371456


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQK9|NLTP1_ORYSJ, E-value = 1e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30182112Oryza glumipatulaSecale cereale22.519.3386.8961forward
CNT30104032Oryza glumipatulaOryza rufipogon90.41100100245forward

Expression of CNT30371456

Peptides detected in this lncRNA

>peptide 1 (88 aa)
GSADGVGDADAALRGDAGGVAGVEPLDAAGRVLEAGPNGGVDLAAGDGHGGVRGGEEQSCHNGDQHQLCTGHGSYYCCSIDRCELVRC*

>peptide 2 (74 aa)
MLAALPALSPLMPRAAFLRQGPTAELTWPQVMATAACGAARSRAATTATNTNCARAMVPTTVARSIGVNWFVADE

Sequence

>CNT30371456
GGAAGCGCTGATGGTGTAGGGGACGCTGACGCCGCACTTAGAGGGGATGCTGGCGGCGTTGCCGGCGTTGAGCCCCTTGATGCCGCGGGCCGCGTTCTTG
AGGCAGGGCCCAACGGCGGAGTTGACCTGGCCGCAGGTGATGGCCACGGCGGCGTGCGGGGCGGCGAGGAGCAGAGCTGCCACAACGGCGACCAACACCA
ACTGTGCACGGGCCATGGTTCCTACTACTGTTGCTCGATCGATCGGTGTGAATTGGTTCGTTGCTGATGAG