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Detailed information on CNT30371441


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672556Oryza glumipatulaSetaria viridis54.967.8891.96224forward
CNT30393881Oryza glumipatulaTriticum turgidum48.2848.8890.36197forward
CNT30587002Oryza glumipatulaMusa acuminata21.0831.8593.0286forward
CNT30511330Oryza glumipatulaSolanum lycopersicum26.2326.2386.92107forward
CNT30555589Oryza glumipatulaOryza glaberrima76.4717.8899.68312forward
CNT30440426Oryza glumipatulaAegilops tauschii31.1327.0892.13127forward
CNT30624277Oryza glumipatulaDaucus carota23.7720.3883.5197forward
CNT30721746Oryza glumipatulaTriticum spelta31.137.993.7127forward
CNT30367313Oryza glumipatulaSorghum bicolor23.0416.5593.6294forward
CNT30596728Oryza glumipatulaOryza meridionalis100.4984.5498.78410forward
CNT3024196Oryza glumipatulaPopulus trichocarpa24.5122.0385100forward
CNT30322486Oryza glumipatulaAsparagus officinalis26.7223.2486.24109forward
CNT30151232Oryza glumipatulaBrachypodium distachyon54.918.4892.86224forward
CNT30104395Oryza glumipatulaOryza rufipogon74.7561.7499.34305forward
CNT30578506Oryza glumipatulaOryza barthii10025.6699.75408forward
CNT30117442Oryza glumipatulaOryza nivara99.7510099.75407forward

Expression of CNT30371441

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTTKTENIHHKCDQSTKQKARPYWNTCPLI*

>peptide 2 (33 aa)
MRPTFWPGGASRRTVEAFPALSIGFSVLPPPAT*

Sequence

>CNT30371441
AACCAGGTAAAAACTTCTTTAGGTGGAATGTAGAATCCAGACCATGACCACGAAAACTGAGAACATTCATCACAAATGTGACCAGAGTACCAAGCAAAAA
GCACGACCATACTGGAATACATGTCCTTTAATCTAGCGATGATAAGCATGGTAGCGAATATGGATAGTAGCAACAATAAGTAACACTCTAAGTGGCCTTG
TCGGCCTTGGCAGCGGTAGCGGCGGCCTGGCCTCTGAGACGACCAGTCCTCCTTGCAGCGATGAGACCAACCTTCTGGCCAGGAGGTGCATCACGGCGGA
CGGTGGAGGCGTTTCCAGCCTTGAGCATCGGCTTCTCAGTCCTGCCACCACCAGCAACCTGACCGATCATGGCACGGCAGCTGCTGGGGACAATCTTCTT
GGCACCAG