Detailed information on CNT30371436


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697529Oryza glumipatulaOryza sativa35.3362.8687.64259forward
CNT30166677Oryza glumipatulaPistacia vera12.2821.6383.3390forward
CNT30349481Oryza glumipatulaEragrostis tef13.2323.2192.7897forward
CNT30597167Oryza glumipatulaOryza meridionalis55.6666.0295.34408forward
CNT30104555Oryza glumipatulaOryza rufipogon91.4191.9192.69670forward

Expression of CNT30371436

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MKRVEFVKVMKVMRPSAWRGTRRTRRPWPAPARRRWRRTRRRDPAARRACRRSAAPAWAAPRRARASAAPEKRRPPRRA*

>peptide 2 (30 aa)
MIIIRSSPFPEDVGSALVLLLPLALDLEII*

>peptide 3 (36 aa)
MNGTFCTQQHKRFQIKSCSTVLRSIKKQFRIGRDTS*

>peptide 4 (54 aa)
MQLCHITKVLGTGMFSWLAKSIDDHHQIITISRRRWIRTCTSPSPRTRSRDHLR*

>peptide 5 (42 aa)
QISTQMIQIHSEHDKRSIMHAVVSYHKGSRYRNVFMAGQIDR*

>peptide 6 (36 aa)
MARAACVQEFGWLELETTRTWCGDGLLVLCVGLGIFG

Sequence

>CNT30371436
ACAAATCTCCACTCAGATGATACAAATACACAGTGAGCACGACAAGCGTTCAATTATGCATGCAGTTGTGTCATATCACAAAGGTTCTAGGTACAGGAAT
GTTTTCATGGCTGGCCAAATCGATCGATGATCATCATCAGATCATCACCATTTCCAGAAGACGTTGGATCCGCACTTGTACTTCTCCTTCCCCTCGCACT
CGATCTCGAGATCATCTGAGATGAACGGGACTTTCTGCACGCAACAACACAAGAGGTTTCAGATTAAATCATGTAGTACTGTCCTCCGTTCCATAAAAAA
ACAATTTAGGATCGGACGTGATACATCCTAAACGAGGTTTGGTTTTTGATAGAATGAAGAGAGTGGAATTTGTGAAGGTAATGAAAGTGATGAGACCTTC
TGCTTGGCGAGGTACTCGTCGAACACGCCGGCCCTGGCCTGCCCCTGCCCGGCGGCGGTGGCGGCGAACACGGCGGCGAGACCCAGCAGCGCGGCGCGCC
TGCCGCCGCTCTGCTGCGCCAGCTTGGGCGGCGCCGCGACGTGCACGCGCTTCGGCAGCGCCGGAGAAGAGGAGGCCACCGCGGCGGGCTTGAGGCCGAC
GACGCTGGTGCTCACTCCGGCCATGGCTCGAGCTGCGTGTGTGCAAGAATTTGGTTGGTTGGAGTTGGAGACGACCAGGACGTGGTGTGGTGATGGTTTA
TTGGTTTTGTGTGTTGGGTTGGGGATATTCGGA