Detailed information on CNT30371435


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697916Oryza glumipatulaOryza sativa80.5238.7494.22277forward
CNT30597117Oryza glumipatulaOryza meridionalis81.9856.6387.23282forward
CNT30104670Oryza glumipatulaOryza rufipogon89.2452.1294.79307forward
CNT30578263Oryza glumipatulaOryza barthii84.0128.3992.73289forward

Expression of CNT30371435

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MYEKELYVCVIIQNKHVVQGVAVHACRISSSLWYTYPSKRSKTYETNTQEEES*

>peptide 2 (45 aa)
GRCTQAKAAEIDGALQGAINVRKRAICMCDNPKQARSTRSCSTCM*

>peptide 3 (31 aa)
MHVESLALSGTRTPRKGAKRTRRTHKKKKAS*

>peptide 4 (29 aa)
WKMHTGQGRRDRWSSTRSYKCTKKSYMYV*

Sequence

>CNT30371435
ATGGAAGATGCACACAGGCCAAGGCCGCAGAGATAGATGGAGCTCTACAAGGAGCTATAAATGTACGAAAAAGAGCTATATGTATGTGTGATAATCCAAA
ACAAGCACGTAGTACAAGGAGTTGCAGTACATGCATGTAGAATCTCTAGCTCTCTCTGGTACACGTACCCCTCGAAAAGGAGCAAAACGTACGAGACGAA
CACACAAGAAGAAGAAAGCTAGCTAGCGTGACCGGGCCGATCAACCATGGATGCACACACATGCATGCATGGTGATTGATCGAGACCTTAGCTAGCTCAT
CTTTTATTCCAGAATACAGATATGATACCACTAGTACTGGATAC