Detailed information on CNT30371428


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30203206Oryza glumipatulaHelianthus annuus26.8833.490.48168forward
CNT30596463Oryza glumipatulaOryza meridionalis12.962098.7781forward
CNT30318666Oryza glumipatulaAsparagus officinalis29.9221.2791.44187forward
CNT30148380Oryza glumipatulaBrachypodium distachyon27.0412.4698.22169reverse complement
CNT30103440Oryza glumipatulaOryza rufipogon2810.898.86175forward

Expression of CNT30371428

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MQAQIESSASLVMPEAKPVNTWFGTPTFRKGKLKR*

>peptide 2 (46 aa)
LYGGESVPGPCTHHPSHYRSWPCLKSLPLTIRRGMPKARLATGVKS*

>peptide 3 (37 aa)
MHRLSSWSRRRTGAGGSVSTIELSIHKLQYVEVRNSK*

>peptide 4 (52 aa)
MLRSGIRSEILDLPVPSRHGKEIRKILLFLFSSAMSKIFTYLPLLGCQTFQF*

Sequence

>CNT30371428
GGCTATACGGCGGTGAATCCGTTCCCGGGCCTTGTACACACCACCCGTCACATTATAGGAGCTGGCCATGTTTGAAGTCATTACCCTTAACCATAAGGAG
GGGGATGCCTAAGGCTAGGCTTGCGACTGGAGTGAAGTCGTAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTTTCAGGGTGTTCGCAA
GCTGATTGAGAAAATATGCAGGCGCAAATTGAAAGCTCTGCTTCCCTTGTTATGCCAGAAGCAAAACCAGTGAATACCTGGTTTGGTACTCCTACTTTCA
GAAAAGGGAAATTAAAAAGATAGTGGATGAATTGTTGCAGTAGGGCTTCTCTCCTCAACTAGCCCCTATGCATCGCCTATCCTCTTGGTCAAGAAGAAGG
ACGGGAGCTGGAGGCTCTGTGTCTACTATAGAGCTCTCAATACACAAACTGCAGTATGTTGAGGTCCGGAATTCGAAGTGAAATTCTTGATTTGCCCGTT
CCTAGTCGTCATGGGAAAGAAATAAGAAAGATATTATTATTCCTTTTCTCTTCAGCTATGTCGAAGATATTTACTTATTTGCCGCTCCTTGGCTGTCAAA
CCTTCCAATTCTAATTTAAAATTCC