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Detailed information on CNT30371424


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41350|OLP1_SOLLC, E-value = 2e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30450175Oryza glumipatulaSaccharum spontaneum33.6636.7980.67238forward
CNT30106795Oryza glumipatulaOryza longistaminata19.6620.8485.61139reverse complement
CNT30104679Oryza glumipatulaOryza rufipogon21.525.8187.5152forward
CNT30578596Oryza glumipatulaOryza barthii25.3218.0386.59179forward

Expression of CNT30371424

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MRTYKHKGTYICTPPLLFLVHLLAVSAGQPETVRSN*

>peptide 2 (44 aa)
NRSWHIAMMRLISRGSSRQYQYGRIHTVGLLRSSYTKTQYEYTM*

>peptide 3 (45 aa)
MSSGSPATMAAWQKTSLISPGEMQCCGTGSTSPPPVLVSGHRCLK*

Sequence

>CNT30371424
GAACAGAAGTTGGCATATTGCCATGATGAGATTAATAAGCAGAGGTAGTAGTAGGCAATATCAATATGGACGGATACATACTGTTGGATTACTAAGATCG
AGTTACACAAAAACACAATACGAATATACGATGTAGACGTACGTACACAAGTATATATATATACAATACTAGAGTAATTAAAAGTAATTTAAAACACGTA
TATGCGCACGTACAAACATAAGGGTACGTACATATGTACCCCGCCTTTGTTATTCCTTGTGCACTTATTAGCAGTTAGCGCGGGCCAACCGGAGACTGTC
CGGAGTAATTAATTAATTAACTGCTTGATGATCTGATTAACTAGTTAAACACGCACTAATTAAAAACACACCACACGTAATTAATTAGCGGACCGGCCGG
CTAGGCTATAGCTAGCTAGTTGTCGGCGACGTCGTCGACGGTGCGGATGAGCTCCGGCTCGCCGGCGACCATGGCGGCCTGGCAGAAGACGAGCTTGATC
TCGCCGGGGGAGATGCAGTGCTGCGGCACGGGCTCCACGTCGCCCCCGCCCGTCCTCGTCAGCGGGCACCGCTGCTTGAAGTAGCTCGCCGGGCCCCTGC
ACGCCACGACGTCGCCGCCGGTGTCGCCGCCGTACACGCGCTGCCCCGCCGCGCACCCGGCGTTGAGGTCGGCCGCGCACCCCAGCGCCGGGCACTGCCC
GCCGCCG