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Detailed information on CNT30371423


BLAST search results

BLAST vs Swiss-Prot:
sp|P18566|RBS2_ORYSJ, E-value = 4e-73

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555612Oryza glumipatulaOryza glaberrima81.8353.8899.29563forward
CNT30664980Oryza glumipatulaTriticum dicoccoides43.4652.6483.95299forward
CNT30578465Oryza glumipatulaOryza barthii81.8345.1599.29563forward
CNT30118102Oryza glumipatulaOryza nivara79.6548.2899.27548forward

Expression of CNT30371423

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVQYLPS*

>peptide 2 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

Sequence

>CNT30371423
TGAACAACAGAAGCATGATTTTTTAATTCCATGATCAAATTTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTCAT
ACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCA
AGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAG
ACATCATCGAATCAGAGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGAT
GAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCAATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACC
TGGGTGGCGTCAGTGCACCCGAACATGGGCAGCTTCCACATGGTCCAGTACCTGCCGTCGTAGCAGGGCACCCACTTGGAACGGAGTAGGTACTCGATCT
GCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAA