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Detailed information on CNT30371405


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007533, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697338Oryza glumipatulaOryza sativa79.7344.5993.2779forward
CNT30107829Oryza glumipatulaOryza longistaminata79.6343.5692.42778forward
CNT30117673Oryza glumipatulaOryza nivara6192.6991.44596forward

Expression of CNT30371405

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MVGCEHMVLKVVLMAIKDRFASYCCETLTVPTTSQRGQRLYLLYSMIHYGVPD*

>peptide 2 (61 aa)
MPLVIFIEGVIMIQEWCTVVSCVVQGVLSQPLFGYFPVSRRMVDIMLRLCLVCTVVHLWPE*

>peptide 3 (51 aa)
MVHCGELCCAGGTVTASIRVLSSIATHGRHNVEAVSCVYSGTPLARVKLFE*

>peptide 4 (43 aa)
MFFVISLTPLTTIIDAITGNNLLSSWFGVRSVQSGMVVQNGWA*

>peptide 5 (35 aa)
MFYSNLCIILECHWVVSLFHLILAEDDFIFLWVII*

>peptide 6 (33 aa)
MLNLFKANVLFQLMYYFRMSLGGEPFPFNSGRR*

Sequence

>CNT30371405
TTCGTGAGTTCGTCGGAAGTGTTCAAGAAGATTAATTGAAGACCGATTATTGCAAGGCAAGTCACACAGATCCCAAACAACCCTTTGAGCATGTTGAACC
TGTTTAAAGCTAATGTTTTATTCCAACTTATGTATTATTTTAGAATGTCATTGGGTGGTGAGCCTTTTCCATTTAATTCTGGCCGAAGATGACTTTATTT
TCCTATGGGTTATAATTTGACTAGCATGGACCTTATATATTGGATTGGTTCAGCTAGATGTTATTTATAGTTGCTTAGCCATGCTTAGAAACAATAGCTC
ATTAATGGGATGAATCATACTACATTATTATTTATGATTATATTTAATGGTAGCTCACGATGGTTAATCGTGTTATGATAATTAATTGATAATTGAAACT
TGTCAATGGTGGGTTGTGAGCACATGGTTTTGAAGGTCGTGCTCATGGCAATTAAGGACCGGTTCGCGAGCTACTGTTGTGAGACATTAACCGTGCCAAC
CACAAGCCAGCGTGGGCAACGGCTTTACCTTTTGTATAGCATGATTCATTACGGGGTGCCAGACTGAGAAGCGGCGAGAAGTCCGTGGGGGTCGCTGGGG
AGTCCATGCCTCTGGTTATATTTATAGAGGGGGTGATTATGATCCAGGAATGGTGCACTGTGGTGAGTTGTGTTGTGCAGGGGGTACTGTCACAGCCTCT
ATTCGGGTACTTTCCAGTATCGCGACGCATGGTAGACATAATGTTGAGGCTGTGTCTTGTGTGTACAGTGGTACACCTCTGGCCAGAGTAAAACTATTCG
AATAGCCGTGCCCGCGGTTATGGGCGGGTTGAGCAATGTTTTTCGTGATTAGTCTCACACCTCTCACAACAATTATTGATGCTATAACTGGTAATAATTT
GCTTAGCTCCTGGTTTGGAGTTAGATCTGTACAGTCGGGTATGGTTGTTCAGAATGGTTGGGCCTGAGCAGCATGGG