Detailed information on CNT30371396


BLAST search results

BLAST vs Swiss-Prot:
sp|P19656|NLTP_MAIZE, E-value = 3e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697800Oryza glumipatulaOryza sativa100.15101.1898.1686forward
CNT30136898Oryza glumipatulaLolium perenne7.8822.4188.8954forward
CNT30342139Oryza glumipatulaEragrostis tef14.629.7687100forward
CNT30367194Oryza glumipatulaSorghum bicolor10.6630.887.6773forward
CNT30597178Oryza glumipatulaOryza meridionalis18.2538.1193.6125forward
CNT30103992Oryza glumipatulaOryza rufipogon74.4582.2694.12510forward
CNT30578175Oryza glumipatulaOryza barthii41.4646.5697.54284forward
CNT30118058Oryza glumipatulaOryza nivara51.6866.2999.15354forward

Expression of CNT30371396

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MDCMDDSIYFYLLQSVERLMGKPTLTPHLPGMPAAWRSAVVRAALFSPLTPLQHPWVRPPLPVT*

>peptide 2 (43 aa)
MHGAIADPTCPHVIAADAPGAATTIAITITAATALKFKAAISI*

Sequence

>CNT30371396
CAAGAAAATTAAGATAGCATGCTGATGCACGCACGGAGCGTGCAACATAAAGTATACAGAGATACAGAGAGAGATGACCAGCGCTGAATGGTATGCCCCA
GCTGTTATTTTTACTGTAGCTATTATTTTGGCTAGTTGATCAACTGCGAGCCAGCATCGATCGATATATCGATCGGTCGGTCTACGCAGGATTAATCGAT
CTAGCTGACCCTGCACCAATGAAATAATCATGCATATATACAGTGGATTAGTCAGTAAATTAAGTTGAATTAACCTGAAAAAAGTAACATGCATGGATTG
CATGGATGATAGTATATATTTTTACTTGCTGCAGTCAGTGGAGAGGCTGATGGGGAAGCCGACGTTGACGCCGCACTTGCCGGGGATGCCGGCGGCCTGG
CGGTCAGCGGTGGTGCGGGCGGCGTTGTTCAGCCCCTTGACGCCGTTGCAGCATCCCTGGGTGAGGCCACCCCTCCCCGTCACGTAAGAGATGCACGGCG
CGATCGCCGACCCCACCTGCCCGCACGTTATCGCCGCCGACGCCCCCGGCGCCGCCACCACCATCGCCATCACCATCACGGCGGCCACCGCCTTGAAGTT
CAAAGCCGCCATATCTATCTAGACTGATGGATGATCGATCGAGTAGCTAGGTAAGCTTCGTTCAGTCAGCGTCTCCTCGTCGCCG