Detailed information on CNT30371391


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0IQK9|NLTP1_ORYSJ, E-value = 9e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30471439Oryza glumipatulaSaccharum spontaneum45.7671.0590.48189forward
CNT30352811Oryza glumipatulaEragrostis tef24.2113.490100forward
CNT30367564Oryza glumipatulaSorghum bicolor21.5515.4896.6389forward
CNT30151138Oryza glumipatulaBrachypodium distachyon27.8538.8589.57115forward
CNT30578426Oryza glumipatulaOryza barthii75.386.63100311forward

Expression of CNT30371391

Peptides detected in this lncRNA

>peptide 1 (29 aa)
VYSTPSCKAMRNYIYLTELDVYIEREMMR*

>peptide 2 (59 aa)
MLAALPALSPLMPRAAFLRQLQAVRRSAVVLAAALRLLTPLQQSCHQGDQHQLCTGHAS*

Sequence

>CNT30371391
TGTATATAGTACTCCATCATGCAAAGCCATGCGTAATTATATATATTTAACGGAATTAGATGTATATATAGAGAGAGAGATGATGAGATGATTAACTAAT
TACCTGGAGCAGTCGATGGAAGCGCTGATGGTGTAGGGGACGCTGACGCCGCACTTGGAGGGGATGCTGGCGGCGTTGCCGGCGTTGAGCCCCTTGATGC
CGCGGGCCGCGTTCTTGAGGCAGTTGCAGGCGGTGCGCCGGTCTGCGGTCGTGCTTGCTGCCGCCTTGAGGCTCCTCACGCCGCTGCAGCAGAGCTGCCA
CCAGGGCGACCAACACCAACTGTGCACGGGCCATGCTTCCTAGCTAGTACTGTTGATCTAGTTGCTGGATCGATCGATCGATCGGTGCGAATTGGTTGCT
GATGATGAGATGG