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Detailed information on CNT30371385


BLAST search results

BLAST vs Swiss-Prot:
sp|P07398|RBS3_WHEAT, E-value = 9e-32

BLAST vs NONCODE:
NONORUT002193, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555604Oryza glumipatulaOryza glaberrima10067.996.1641forward
CNT30685518Oryza glumipatulaTriticum urartu43.6862.9281.43280forward
CNT30597252Oryza glumipatulaOryza meridionalis68.1796.0495.19437forward
CNT30104624Oryza glumipatulaOryza rufipogon98.9185.196.21634forward
CNT30578557Oryza glumipatulaOryza barthii10054.5196.1641forward

Expression of CNT30371385

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MPHPTTYSRSRYHSYIKSERDQVKQKQKQSTAGKIKRR*

>peptide 2 (80 aa)
MKLMSCTCLTLSKPMIRTNASGYAFLASSSSLSTWVASVHPNMGSFHMVLDLLQEVLHGERWQVGEGLELLDALNRPHLNE

Sequence

>CNT30371385
TGAACAACAGAAGCATGATTTTTTAATTCCATGATCAAATTTTCATTGTCGACGAATTGATTGTTGGACACATATGCTCTAGGATTCACATCCATCTCAT
ACCCTTTGTATAAATATATATAGCCGGAGCTTTCATAGATTTCATTCACATATGCCTCACCCAACAACATATAGTCGTAGCAGATACCACTCTTACATCA
AGTCAGAGAGAGATCAGGTGAAACAAAAACAAAAGCAGAGCACGGCCGGTAAAATCAAAAGACGATGAACAAACTGGGAACACACGAAACAAGGTGGGAG
ACATCATCGAATCAGAGATGAACAATTAAACAAGGCTATATATGACGATGACGGCTTAGTTGCCACCAGACTCCTCGCAGCCCGGGGGCTTGTAGGCGAT
GAAGCTGATGAGCTGCACCTGCCTGACGTTGTCGAAGCCAATGATACGGACGAATGCATCAGGGTACGCCTTCTTGGCCTCCTCGAGCTCCTTGAGCACC
TGGGTGGCGTCAGTGCACCCGAACATGGGCAGCTTCCACATGGTACTCGATCTGCTTCAGGAGGTCCTCCACGGTGAGCGGTGGCAGGTAGGAGAGGGTC
TCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATGAA