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Detailed information on CNT30371382


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693943Oryza glumipatulaOryza sativa56.9255.8796.71395forward
CNT30553350Oryza glumipatulaOryza glaberrima56.9262.496.46395forward
CNT30596942Oryza glumipatulaOryza meridionalis58.0736.6494.04403forward
CNT30117852Oryza glumipatulaOryza nivara56.9246.6495.95395forward

Expression of CNT30371382

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVWIVWFISVLTFLITACRDVRIFRGDSAEISNNFRT*

Sequence

>CNT30371382
AATAGATGTGAGCCGTTAGATCTTATTTAGTCTCTTTATATAACCAACCAAAAAAAAACAAACGAAAAAAAAAAGAAACAGGAGAATCGCTCCTGTAGCC
CTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTGTCTTCGCCGGCGCCGCCGCTGGTGTAGCCGTCGCCGGTCGCCACAGCCGTCGT
CGTCCACAGCCGGTCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAAGAAGGGGAAATTTGATAGAAGAAGGGAAATTTGGGGAAT
TTGGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTAGGTACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACCCTTGGACT
ACACATTATTATTGCACACAACTGAAATTAAGTTTAAAACAAATTTTTTGCTCAGCATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGAT
CCTTATTTTTCACGTGGGATTTGTGGAGCTGGGATGGTTTGGATTGTGTGGTTTATATCGGTATTGACCTTTCTTATAACTGCCTGTCGTGATGTCCGTA
TTTTTAGGGGAGATTCTGCCGAAATTTCTAATAATTTTAGGACCTAGTTTTTGAGTGTATTTTGGTGTGGCATTTTAGGTACGTGGTTACCTGG