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Detailed information on CNT30371358


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696855Oryza glumipatulaOryza sativa31.4755.2100191forward
CNT30555309Oryza glumipatulaOryza glaberrima54.3765.6197.58330forward
CNT30464185Oryza glumipatulaSaccharum spontaneum14.9922.6491.2191forward
CNT30349851Oryza glumipatulaEragrostis tef9.0621.3294.5555reverse complement
CNT30104073Oryza glumipatulaOryza rufipogon54.3740.89100330forward
CNT30578326Oryza glumipatulaOryza barthii10070.3495.39607forward
CNT30117901Oryza glumipatulaOryza nivara54.3755.37100330forward

Expression of CNT30371358

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MTRREPCTPLIWTHRGQGCRENQATQAELTAPPVSLSLVEAGDSCEKQQHHACRRRQIITHTNRRHGGRRRTARSSPPPATL*

>peptide 2 (39 aa)
SLVQSTDKNTLIHDTERAMHTTYLDTQRARLQRKSSNTS*

>peptide 3 (77 aa)
MQKKTNYYTHKSTTRRPATYGEVVAAAGDVVMRSISRRGGASSRRCCLCLCCFSSFLYLSYSSWPPATTSVVTVSDV*

Sequence

>CNT30371358
TTCACTTGTACAAAGTACAGATAAAAATACATTGATACATGACACGGAGAGAGCCATGCACACCACTTATTTGGACACACAGAGGGCAAGGCTGCAGAGA
AAATCAAGCAACACAAGCTGAACTCACGGCCCCACCTGTCAGCCTCTCACTGGTCGAGGCCGGAGACTCTTGTGAAAAACAGCAACACCACGCATGCAGA
AGAAGACAAATTATTACACACACAAATCGACGACACGGCGGCCGGCGACGTACGGCGAGGTCGTCGCCGCCGCCGGCGACGTTGTGATGAGGTCGATCAG
CCGAAGAGGTGGTGCTTCTTCTCGCCGGTGCTGCTTGTGCTTGTGCTGCTTCTCCTCCTTCTTGTACCTCTCGTACTCGTCCTGGCCGCCGGCGACCACC
TCGGTGGTCACCGTCTCCGACGTGTAGACGCCCTCGCCGTAGGAGTCTACTCCGGTGGCCGGCTCGTCGTCCTTCTTGTGGTGGAACAGGTGGTGGTGGT
GCTTCTCCTCCGCCATGGCTAATTAATTAATTAAGCTAGCTAGAAGCTAGTGATGACAATTAGGAGAATGAGATGGAAGTGACAATAAGATGTAGCTTTG
CTTGCTT